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new file: i/IRODS/IRODS-0.7.3.eb new file: l/libxc/libxc-5.1.5-intel-2020a.eb new file: n/NodeODM/NodeODM-2.2.0-GCCcore-11.3.0.eb new file: o/ODM/ODM-2.8.7/.dockerignore new file: o/ODM/ODM-2.8.7/.github/workflows/publish-docker-and-wsl.yaml new file: o/ODM/ODM-2.8.7/.github/workflows/publish-docker-gpu.yaml new file: o/ODM/ODM-2.8.7/.github/workflows/publish-snap.yml new file: o/ODM/ODM-2.8.7/.github/workflows/publish-windows.yml new file: o/ODM/ODM-2.8.7/.github/workflows/test-build-prs.yaml new file: o/ODM/ODM-2.8.7/.gitignore new file: o/ODM/ODM-2.8.7/.gitmodules new file: o/ODM/ODM-2.8.7/CNAME new file: o/ODM/ODM-2.8.7/CONTRIBUTING.md new file: o/ODM/ODM-2.8.7/Dockerfile new file: o/ODM/ODM-2.8.7/LICENSE new file: o/ODM/ODM-2.8.7/README.md new file: o/ODM/ODM-2.8.7/SuperBuild/CMakeLists.txt new file: o/ODM/ODM-2.8.7/SuperBuild/cmake/External-Ceres.cmake new file: o/ODM/ODM-2.8.7/SuperBuild/cmake/External-Entwine.cmake new file: 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o/ODM/ODM-2.8.7/opendm/ogctiles.py new file: o/ODM/ODM-2.8.7/opendm/orthophoto.py new file: o/ODM/ODM-2.8.7/opendm/osfm.py new file: o/ODM/ODM-2.8.7/opendm/photo.py new file: o/ODM/ODM-2.8.7/opendm/point_cloud.py new file: o/ODM/ODM-2.8.7/opendm/progress.py new file: o/ODM/ODM-2.8.7/opendm/pseudogeo.py new file: o/ODM/ODM-2.8.7/opendm/remote.py new file: o/ODM/ODM-2.8.7/opendm/report/dsm_gradient.png new file: o/ODM/ODM-2.8.7/opendm/report/overlap_color_map.txt new file: o/ODM/ODM-2.8.7/opendm/report/overlap_diagram_legend.png new file: o/ODM/ODM-2.8.7/opendm/rollingshutter.py new file: o/ODM/ODM-2.8.7/opendm/shots.py new file: o/ODM/ODM-2.8.7/opendm/system.py new file: o/ODM/ODM-2.8.7/opendm/thermal.py new file: o/ODM/ODM-2.8.7/opendm/thermal_tools/__init__.py new file: o/ODM/ODM-2.8.7/opendm/thermal_tools/dji_unpack.py new file: o/ODM/ODM-2.8.7/opendm/thermal_tools/flir_unpack.py new file: o/ODM/ODM-2.8.7/opendm/thermal_tools/thermal_utils.py new file: o/ODM/ODM-2.8.7/opendm/tiles/color_relief.txt new file: o/ODM/ODM-2.8.7/opendm/tiles/gdal2tiles.py new file: o/ODM/ODM-2.8.7/opendm/tiles/hsv_merge.py new file: o/ODM/ODM-2.8.7/opendm/tiles/tiler.py new file: o/ODM/ODM-2.8.7/opendm/types.py new file: o/ODM/ODM-2.8.7/opendm/utils.py new file: o/ODM/ODM-2.8.7/opendm/vendor/__init__.py new file: o/ODM/ODM-2.8.7/opendm/vendor/gdal_fillnodata.py new file: o/ODM/ODM-2.8.7/portable.Dockerfile new file: o/ODM/ODM-2.8.7/requirements.txt new file: o/ODM/ODM-2.8.7/run.bat new file: o/ODM/ODM-2.8.7/run.py new file: o/ODM/ODM-2.8.7/run.sh new file: o/ODM/ODM-2.8.7/snap/snapcraft.yaml new file: o/ODM/ODM-2.8.7/snap/snapcraft21.yaml new file: o/ODM/ODM-2.8.7/stages/__init__.py new file: o/ODM/ODM-2.8.7/stages/dataset.py new file: o/ODM/ODM-2.8.7/stages/mvstex.py new file: o/ODM/ODM-2.8.7/stages/odm_app.py new file: o/ODM/ODM-2.8.7/stages/odm_dem.py new file: o/ODM/ODM-2.8.7/stages/odm_filterpoints.py new file: o/ODM/ODM-2.8.7/stages/odm_georeferencing.py new file: o/ODM/ODM-2.8.7/stages/odm_meshing.py new file: o/ODM/ODM-2.8.7/stages/odm_orthophoto.py new file: o/ODM/ODM-2.8.7/stages/odm_postprocess.py new file: o/ODM/ODM-2.8.7/stages/odm_report.py new file: o/ODM/ODM-2.8.7/stages/openmvs.py new file: o/ODM/ODM-2.8.7/stages/run_opensfm.py new file: o/ODM/ODM-2.8.7/stages/splitmerge.py new file: o/ODM/ODM-2.8.7/start-dev-env.sh new file: o/ODM/ODM-2.8.7/test.sh new file: o/ODM/ODM-2.8.7/tests/assets/.gitignore new file: o/ODM/ODM-2.8.7/tests/assets/gcp_extras.txt new file: o/ODM/ODM-2.8.7/tests/assets/gcp_latlon_south.txt new file: o/ODM/ODM-2.8.7/tests/assets/gcp_latlon_valid.txt new file: o/ODM/ODM-2.8.7/tests/assets/gcp_michigan_feet_valid.txt new file: o/ODM/ODM-2.8.7/tests/assets/gcp_utm_north_valid.txt new file: o/ODM/ODM-2.8.7/tests/assets/images/DJI_0002.JPG new file: o/ODM/ODM-2.8.7/tests/assets/reconstruction.json new file: o/ODM/ODM-2.8.7/tests/assets/sample.json new file: o/ODM/ODM-2.8.7/tests/test_camera.py new file: o/ODM/ODM-2.8.7/tests/test_gcp.py new file: o/ODM/ODM-2.8.7/tests/test_osfm.py new file: o/ODM/ODM-2.8.7/tests/test_remote.py new file: o/ODM/ODM-2.8.7/tests/test_types.py new file: o/ODM/ODM-2.8.7/vcpkg-requirements.txt new file: o/ODM/ODM-2.8.7/win32env.bat new file: o/ODM/ODM-2.8.7/winrun.bat new file: o/ODM/v2.8.7.tar.gz new file: y/Yambo/Yambo-5.1.0-intel-2020a.eb new file: y/Yambo/Yambo-5.1.0-intel-2020a.eb.bak_20220715124556_61837 new file: y/Yambo/Yambo-5.1.0-intel-2021a.eb.old deleted: y/Yambo/Yambo-5.1.0-intel-2021a.eb
150 lines
4.8 KiB
Python
150 lines
4.8 KiB
Python
#!/usr/bin/env python
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# To run, set the following env variables:
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# PYTHONHOME location of Python
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# PYTHONPATH location of GRASS Python libs
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# PATH include GRASS bin and lib
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# GISBASE location of GRASS
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import os
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import sys
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import grass.script as gscript
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import grass.script.core
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import grass.script.setup
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rsurfName = 'odm_rsurf'
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contourName = 'odm_contour'
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orthophotoName = 'odm_orthophoto'
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reliefName = 'odm_relief'
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shadedReliefName = reliefName + '_shaded'
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overwrite = True
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def main():
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if len(sys.argv) < 2:
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sys.exit('Please provide the ODM project path.')
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projectHome = sys.argv[1]
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gisdb = projectHome+'/grassdata'
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location = 'odm'
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gisrc = gscript.setup.init(os.environ['GISBASE'], gisdb, location)
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# get srs and initial extents
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with open(projectHome+'/odm_georeferencing/coords.txt') as f:
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srs = f.readline().split()
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mean = f.readline().split()
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meanX = float(mean[0])
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meanY = float(mean[1])
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minX = float('inf')
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maxX = float('-inf')
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minY = float('inf')
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maxY = float('-inf')
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for line in f:
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xy = line.split()
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x = float(xy[0])
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y = float(xy[1])
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minX = min(x, minX)
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maxX = max(x, maxX)
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minY = min(y, minY)
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maxY = max(y, maxY)
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datum = srs[0]
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proj = srs[1]
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zone = srs[2]
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gscript.core.create_location(gisdb, location, datum=datum,
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proj4='+proj='+proj+' +zone='+zone,
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overwrite=overwrite)
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n = meanY + maxY
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s = meanY + minY
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e = meanX + maxX
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w = meanX + minX
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gscript.run_command('g.region', flags='s', n=n, s=s, e=e, w=w, res=0.01,
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res3=0.01, overwrite=overwrite)
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contour(projectHome)
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relief(projectHome)
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os.remove(gisrc)
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def contour(projectHome):
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"""
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Creates a contour map based on the ODM project DEM model.
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"""
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print 'Creating contour map'
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step = 0.25
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gscript.run_command('r.in.gdal', flags='o',
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input=projectHome+'/odm_georeferencing/odm_georeferencing_model_dem.tif',
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output=rsurfName, memory=2047,
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overwrite=overwrite)
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gscript.run_command('r.contour', input=rsurfName, output=contourName,
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step=step, overwrite=overwrite)
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gscript.run_command('v.out.ogr', input=contourName,
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output=projectHome +
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'/odm_georeferencing/odm_contour.shp',
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overwrite=overwrite)
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def relief(projectHome):
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"""
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Creates a textured relief map in GeoTIFF format.
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NB: this is an RGBA raster and so is readable by image software.
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"""
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print 'Creating relief map'
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gscript.run_command('r.in.gdal', flags='o',
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input=projectHome+'/odm_orthophoto/odm_orthophoto.tif',
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output=orthophotoName, memory=2047,
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overwrite=overwrite)
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gscript.run_command('r.composite', red=orthophotoName+'.red',
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green=orthophotoName+'.green',
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blue=orthophotoName+'.blue',
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output=orthophotoName+'.rgb',
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overwrite=overwrite)
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gscript.run_command('r.relief', input=rsurfName, output=reliefName,
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overwrite=overwrite)
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gscript.run_command('r.shade', shade=reliefName,
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color=orthophotoName+'.rgb', output=shadedReliefName,
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overwrite=overwrite)
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calc = ';'.join([
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'$shadedRelief.red = ' +
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'if(isnull($orthophoto.red), 0, r#$shadedRelief)',
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'$shadedRelief.green = ' +
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'if(isnull($orthophoto.green), 0, g#$shadedRelief)',
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'$shadedRelief.blue = ' +
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'if(isnull($orthophoto.blue), 0, b#$shadedRelief)',
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'$shadedRelief.alpha = ' +
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'if(isnull($orthophoto.alpha), 0, 255)'
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])
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gscript.mapcalc(calc, shadedRelief=shadedReliefName,
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orthophoto=orthophotoName, overwrite=overwrite)
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gscript.run_command('i.group', group=shadedReliefName+'.group',
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input=shadedReliefName+'.red,' +
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shadedReliefName+'.green,' +
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shadedReliefName+'.blue,' +
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shadedReliefName+'.alpha')
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gscript.run_command('r.out.gdal', flags='cm',
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input=shadedReliefName+'.group',
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output=projectHome+'/odm_orthophoto/odm_relief.tif',
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format='GTiff', type='Byte',
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createopt='TILED=yes,COMPRESS=DEFLATE,PREDICTOR=2,' +
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'BLOCKXSIZE=512,BLOCKYSIZE=512',
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nodata=0, overwrite=overwrite)
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if __name__ == '__main__':
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main()
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