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This commit is contained in:
Lukáš Krupčík 2018-10-03 07:48:02 +02:00
parent e3338cde79
commit 92cb0848fe
1669 changed files with 12954 additions and 6104 deletions
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1
a/ABINIT/ABINIT-7.10.1-goolf-1.5.16.eb
View File

@ -29,4 +29,3 @@ configopts = '''CC=mpicc CXX=mpicxx FC=mpif90 --enable-mpi --enable-mpi-io --ena
''' --enable-gw-dpc="yes" --enable-memory-profiling="no" --enable-openmp="no" --enable-maintainer-checks="no"''' + \ ''' --enable-gw-dpc="yes" --enable-memory-profiling="no" --enable-openmp="no" --enable-maintainer-checks="no"''' + \
''' --enable-debug="no" ''' + \ ''' --enable-debug="no" ''' + \
''' --with-trio-flavor="netcdf+etsf_io+fox" --with-dft-flavor="atompaw+bigdft+libxc+wannier90"''' ''' --with-trio-flavor="netcdf+etsf_io+fox" --with-dft-flavor="atompaw+bigdft+libxc+wannier90"'''

11
a/ABINIT/ABINIT-8.2.2-intel-2017a.eb
View File

@ -26,7 +26,16 @@ dependencies = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/%s' % x for x in ['abinit', 'aim', 'cut3d', 'conducti', 'mrgddb', 'mrgscr', 'optic']], 'files': [
'bin/%s' %
x for x in [
'abinit',
'aim',
'cut3d',
'conducti',
'mrgddb',
'mrgscr',
'optic']],
'dirs': ['lib/pkgconfig'], 'dirs': ['lib/pkgconfig'],
} }

11
a/ABINIT/ABINIT-8.6.1-intel-2017a.eb
View File

@ -26,7 +26,16 @@ dependencies = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/%s' % x for x in ['abinit', 'aim', 'cut3d', 'conducti', 'mrgddb', 'mrgscr', 'optic']], 'files': [
'bin/%s' %
x for x in [
'abinit',
'aim',
'cut3d',
'conducti',
'mrgddb',
'mrgscr',
'optic']],
'dirs': ['lib/pkgconfig'], 'dirs': ['lib/pkgconfig'],
} }

12
a/ACTC/ACTC-1.1-intel-2017a.eb
View File

@ -23,8 +23,16 @@ files_to_copy = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/tctest', 'bin/tctest2', 'bin/tcsample', 'include/ac/tc.h', 'lib/libactc.a', 'files': [
'COPYRIGHT', 'manual.html', 'prims.gif', 'README'], 'bin/tctest',
'bin/tctest2',
'bin/tcsample',
'include/ac/tc.h',
'lib/libactc.a',
'COPYRIGHT',
'manual.html',
'prims.gif',
'README'],
'dirs': [], 'dirs': [],
} }

13
a/ALPScore/ALPScore-2.1.1-intel-2017b.eb
View File

@ -30,8 +30,17 @@ modextravars = {
} }
sanity_check_paths = { sanity_check_paths = {
'files': ['lib/libalps-accumulators.so', 'lib/libalps-gf.so', 'lib/libalps-hdf5.so', 'lib/libalps-mc.so', 'lib/libalps-params.so', 'lib/libalps-utilities.so'], 'files': [
'dirs': ['include/alps', 'lib/', 'share/'], 'lib/libalps-accumulators.so',
'lib/libalps-gf.so',
'lib/libalps-hdf5.so',
'lib/libalps-mc.so',
'lib/libalps-params.so',
'lib/libalps-utilities.so'],
'dirs': [
'include/alps',
'lib/',
'share/'],
} }
moduleclass = 'phys' moduleclass = 'phys'

6
a/APR-util/APR-util-1.5.4.eb
View File

@ -20,7 +20,11 @@ dependencies = [
configopts = "--with-apr=$EBROOTAPR/bin/apr-1-config --with-sqlite3=$EBROOTSQLITE --with-expat=$EBROOTEXPAT " configopts = "--with-apr=$EBROOTAPR/bin/apr-1-config --with-sqlite3=$EBROOTSQLITE --with-expat=$EBROOTEXPAT "
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/apu-1-config", "lib/libaprutil-1.%s" % SHLIB_EXT, "lib/libaprutil-1.a"], 'files': [
"bin/apu-1-config",
"lib/libaprutil-1.%s" %
SHLIB_EXT,
"lib/libaprutil-1.a"],
'dirs': ["include/apr-1"], 'dirs': ["include/apr-1"],
} }

6
a/APR/APR-1.5.2.eb
View File

@ -12,7 +12,11 @@ source_urls = ['http://archive.apache.org/dist/apr/']
sources = [SOURCELOWER_TAR_GZ] sources = [SOURCELOWER_TAR_GZ]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/apr-1-config", "lib/libapr-1.%s" % SHLIB_EXT, "lib/libapr-1.a"], 'files': [
"bin/apr-1-config",
"lib/libapr-1.%s" %
SHLIB_EXT,
"lib/libapr-1.a"],
'dirs': ["include/apr-1"], 'dirs': ["include/apr-1"],
} }

7
a/ASE/ASE-3.15.0-Py-3.6.eb
View File

@ -23,7 +23,12 @@ dependencies = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/ase-build', 'bin/ase-db', 'bin/ase-gui', 'bin/ase-info', 'bin/ase-run'], 'files': [
'bin/ase-build',
'bin/ase-db',
'bin/ase-gui',
'bin/ase-info',
'bin/ase-run'],
'dirs': ['lib/python3.6/site-packages'], 'dirs': ['lib/python3.6/site-packages'],
} }

7
a/ASE/ASE-3.15.0-Python-2.7.13-base-test.eb
View File

@ -24,7 +24,12 @@ dependencies = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/ase-build', 'bin/ase-db', 'bin/ase-gui', 'bin/ase-info', 'bin/ase-run'], 'files': [
'bin/ase-build',
'bin/ase-db',
'bin/ase-gui',
'bin/ase-info',
'bin/ase-run'],
'dirs': ['lib/python%(pyshortver)s/site-packages'], 'dirs': ['lib/python%(pyshortver)s/site-packages'],
} }

7
a/ASE/ASE-3.15.0-Python-2.7.13-base.eb
View File

@ -24,7 +24,12 @@ dependencies = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/ase-build', 'bin/ase-db', 'bin/ase-gui', 'bin/ase-info', 'bin/ase-run'], 'files': [
'bin/ase-build',
'bin/ase-db',
'bin/ase-gui',
'bin/ase-info',
'bin/ase-run'],
'dirs': ['lib/python%(pyshortver)s/site-packages'], 'dirs': ['lib/python%(pyshortver)s/site-packages'],
} }

7
a/ASE/ASE-3.15.0-Python-3.6.4-base-test.eb
View File

@ -24,7 +24,12 @@ dependencies = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/ase-build', 'bin/ase-db', 'bin/ase-gui', 'bin/ase-info', 'bin/ase-run'], 'files': [
'bin/ase-build',
'bin/ase-db',
'bin/ase-gui',
'bin/ase-info',
'bin/ase-run'],
'dirs': ['lib/python%(pyshortver)s/site-packages'], 'dirs': ['lib/python%(pyshortver)s/site-packages'],
} }

7
a/ASE/ASE-3.15.0-intel-2017a-Python-2.7.13.eb
View File

@ -22,7 +22,12 @@ dependencies = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/ase-build', 'bin/ase-db', 'bin/ase-gui', 'bin/ase-info', 'bin/ase-run'], 'files': [
'bin/ase-build',
'bin/ase-db',
'bin/ase-gui',
'bin/ase-info',
'bin/ase-run'],
'dirs': ['lib/python%(pyshortver)s/site-packages'], 'dirs': ['lib/python%(pyshortver)s/site-packages'],
} }

8
a/ASHS/ASHS-rev103_20140612.eb
View File

@ -21,9 +21,11 @@ checksums= ["07fea2883b856af8797b200212b72e71"]
modextravars = {'ASHS_ROOT': '%(installdir)s'} modextravars = {'ASHS_ROOT': '%(installdir)s'}
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/ashs_main.sh", "bin/ashs_template_qsub.sh", "bin/ashs_train.sh", 'files': [
"bin/ashs_main.sh",
"bin/ashs_template_qsub.sh",
"bin/ashs_train.sh",
"bin/ashs_util_makepdf.sh"], "bin/ashs_util_makepdf.sh"],
'dirs': ["ext"] 'dirs': ["ext"]}
}
moduleclass = 'bio' moduleclass = 'bio'

3
a/ATLAS/ATLAS-3.10.2-GCC-5.4.0-2.26-LAPACK-3.6.1.eb
View File

@ -14,7 +14,8 @@ lapackver = '3.6.1'
versionsuffix = '-LAPACK-%s' % lapackver versionsuffix = '-LAPACK-%s' % lapackver
source_urls = [ source_urls = [
('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s', 'download'), ('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s',
'download'),
'http://www.netlib.org/lapack/', 'http://www.netlib.org/lapack/',
] ]
sources = [ sources = [

3
a/ATLAS/ATLAS-3.10.3-GCC-5.4.0-2.26-LAPACK-3.6.1.eb
View File

@ -14,7 +14,8 @@ lapackver = '3.6.1'
versionsuffix = '-LAPACK-%s' % lapackver versionsuffix = '-LAPACK-%s' % lapackver
source_urls = [ source_urls = [
('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s', 'download'), ('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s',
'download'),
'http://www.netlib.org/lapack/', 'http://www.netlib.org/lapack/',
] ]
sources = [ sources = [

3
a/ATLAS/ATLAS-3.10.3-GCC-6.3.0-2.27-LAPACK-3.6.1.eb
View File

@ -16,7 +16,8 @@ lapackver = '3.6.1'
versionsuffix = '-LAPACK-%s' % lapackver versionsuffix = '-LAPACK-%s' % lapackver
source_urls = [ source_urls = [
('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s', 'download'), ('http://sourceforge.net/projects/math-atlas/files/Stable/%(version)s',
'download'),
'http://www.netlib.org/lapack/', 'http://www.netlib.org/lapack/',
] ]
sources = [ sources = [

6
a/Amber/Amber-16-iomkl-2016.07-AmberTools-16-patchlevel-5-14-serial.eb
View File

@ -1,9 +1,11 @@
name = 'Amber' name = 'Amber'
version = '16' version = '16'
ambertools_ver = '16' ambertools_ver = '16'
# Patch levels from http://ambermd.org/bugfixes16.html and http://ambermd.org/bugfixesat.html # Patch levels from http://ambermd.org/bugfixes16.html and
# http://ambermd.org/bugfixesat.html
patchlevels = (5, 14) # (AmberTools, Amber) patchlevels = (5, 14) # (AmberTools, Amber)
versionsuffix = '-AmberTools-%s-patchlevel-%s-%s-serial' %(ambertools_ver, patchlevels[0], patchlevels[1]) versionsuffix = '-AmberTools-%s-patchlevel-%s-%s-serial' % (
ambertools_ver, patchlevels[0], patchlevels[1])
homepage = 'http://ambermd.org/amber.html' homepage = 'http://ambermd.org/amber.html'
description = """Amber (originally Assisted Model Building with Energy description = """Amber (originally Assisted Model Building with Energy

6
a/Amber/Amber-16-iomkl-2016.07-AmberTools-16-patchlevel-5-14.eb
View File

@ -1,9 +1,11 @@
name = 'Amber' name = 'Amber'
version = '16' version = '16'
ambertools_ver = '16' ambertools_ver = '16'
# Patch levels from http://ambermd.org/bugfixes16.html and http://ambermd.org/bugfixesat.html # Patch levels from http://ambermd.org/bugfixes16.html and
# http://ambermd.org/bugfixesat.html
patchlevels = (5, 14) # (AmberTools, Amber) patchlevels = (5, 14) # (AmberTools, Amber)
versionsuffix = '-AmberTools-%s-patchlevel-%s-%s' %(ambertools_ver, patchlevels[0], patchlevels[1]) versionsuffix = '-AmberTools-%s-patchlevel-%s-%s' % (
ambertools_ver, patchlevels[0], patchlevels[1])
homepage = 'http://ambermd.org/amber.html' homepage = 'http://ambermd.org/amber.html'
description = """Amber (originally Assisted Model Building with Energy description = """Amber (originally Assisted Model Building with Energy

6
a/Amber/Amber-16-iomkl-2016.09-GCC-4.9.3-2.25-AmberTools-16-patchlevel-5-14-CUDA.eb
View File

@ -1,9 +1,11 @@
name = 'Amber' name = 'Amber'
version = '16' version = '16'
ambertools_ver = '16' ambertools_ver = '16'
# Patch levels from http://ambermd.org/bugfixes16.html and http://ambermd.org/bugfixesat.html # Patch levels from http://ambermd.org/bugfixes16.html and
# http://ambermd.org/bugfixesat.html
patchlevels = (5, 14) # (AmberTools, Amber) patchlevels = (5, 14) # (AmberTools, Amber)
versionsuffix = '-AmberTools-%s-patchlevel-%s-%s-CUDA' %(ambertools_ver, patchlevels[0], patchlevels[1]) versionsuffix = '-AmberTools-%s-patchlevel-%s-%s-CUDA' % (
ambertools_ver, patchlevels[0], patchlevels[1])
homepage = 'http://ambermd.org/amber.html' homepage = 'http://ambermd.org/amber.html'
description = """Amber (originally Assisted Model Building with Energy description = """Amber (originally Assisted Model Building with Energy

3
a/AmberTools/AmberTools-16-intel-2015b-Python-2.7.11.eb
View File

@ -31,6 +31,7 @@ dependencies = [
patchlevels = (13, 13) patchlevels = (13, 13)
patchruns = 1 patchruns = 1
versionsuffix = '-AmberTools-%s-patchlevel-%d-%d' % (ambertools_ver, patchlevels[0], patchlevels[1]) versionsuffix = '-AmberTools-%s-patchlevel-%d-%d' % (
ambertools_ver, patchlevels[0], patchlevels[1])
moduleclass = 'chem' moduleclass = 'chem'

12
a/Autoconf/Autoconf-2.69.eb
View File

@ -18,8 +18,16 @@ sources = [SOURCELOWER_TAR_GZ]
dependencies = [('M4', '1.4.18')] dependencies = [('M4', '1.4.18')]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/%s" % x for x in ["autoconf", "autoheader", "autom4te", "autoreconf", "autoscan", 'files': [
"autoupdate", "ifnames"]], "bin/%s" %
x for x in [
"autoconf",
"autoheader",
"autom4te",
"autoreconf",
"autoscan",
"autoupdate",
"ifnames"]],
'dirs': [], 'dirs': [],
} }

11
a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb
View File

@ -22,8 +22,13 @@ patches = [
configopts = '--enable-mpi --with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' configopts = '--enable-mpi --with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"'
sanity_check_paths = { sanity_check_paths = {
'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT, "lib/libparpack.a", "lib/libparpack.%s" % SHLIB_EXT], 'files': [
'dirs': [] "lib/libarpack.a",
} "lib/libarpack.%s" %
SHLIB_EXT,
"lib/libparpack.a",
"lib/libparpack.%s" %
SHLIB_EXT],
'dirs': []}
moduleclass = 'numlib' moduleclass = 'numlib'

11
a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb
View File

@ -22,8 +22,13 @@ patches = [
configopts = '--enable-mpi --with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"' configopts = '--enable-mpi --with-pic --with-blas="$LIBBLAS" --with-lapack="$LIBLAPACK"'
sanity_check_paths = { sanity_check_paths = {
'files': ["lib/libarpack.a", "lib/libarpack.%s" % SHLIB_EXT, "lib/libparpack.a", "lib/libparpack.%s" % SHLIB_EXT], 'files': [
'dirs': [] "lib/libarpack.a",
} "lib/libarpack.%s" %
SHLIB_EXT,
"lib/libparpack.a",
"lib/libparpack.%s" %
SHLIB_EXT],
'dirs': []}
moduleclass = 'numlib' moduleclass = 'numlib'

6
a/astroid/astroid-1.5.3-Python-2.7.13-base.eb
View File

@ -21,9 +21,7 @@ dependencies = [
('Python', '2.7.13', '-base', True), ('Python', '2.7.13', '-base', True),
] ]
sanity_check_paths = { sanity_check_paths = {'files': [], 'dirs': [
'files': [], 'lib/python%(pyshortver)s/site-packages/astroid-%(version)s-py2.7.egg'], }
'dirs': ['lib/python%(pyshortver)s/site-packages/astroid-%(version)s-py2.7.egg'],
}
moduleclass = 'lib' moduleclass = 'lib'

6
a/asv/asv-0.2.1-Py-2.7.eb
View File

@ -16,9 +16,7 @@ dependencies = [
('six', '1.11.0'), ('six', '1.11.0'),
] ]
sanity_check_paths = { sanity_check_paths = {'files': [], 'dirs': [
'files': [], 'lib/python2.7/site-packages/%(name)s-%(version)s-py2.7-linux-x86_64.egg'], }
'dirs': ['lib/python2.7/site-packages/%(name)s-%(version)s-py2.7-linux-x86_64.egg'],
}
moduleclass = 'python' moduleclass = 'python'

6
a/asv/asv-0.2.1-Py-3.6.eb
View File

@ -16,9 +16,7 @@ dependencies = [
('six', '1.11.0'), ('six', '1.11.0'),
] ]
sanity_check_paths = { sanity_check_paths = {'files': [], 'dirs': [
'files': [], 'lib/python3.6/site-packages/%(name)s-%(version)s-py3.6-linux-x86_64.egg'], }
'dirs': ['lib/python3.6/site-packages/%(name)s-%(version)s-py3.6-linux-x86_64.egg'],
}
moduleclass = 'python' moduleclass = 'python'

10
b/BCFtools/BCFtools-1.2-foss-2015a.eb
View File

@ -11,7 +11,8 @@ toolchain = {'name': 'foss', 'version': '2015a'}
toolchainopts = {'optarch': True, 'pic': True} toolchainopts = {'optarch': True, 'pic': True}
sources = [SOURCELOWER_TAR_BZ2] sources = [SOURCELOWER_TAR_BZ2]
source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] source_urls = [
'https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch']
@ -32,7 +33,12 @@ postinstallcmds = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']], 'files': [
'bin/%s' %
x for x in [
'bcftools',
'plot-vcfstats',
'vcfutils.pl']],
'dirs': ['lib/plugins'], 'dirs': ['lib/plugins'],
} }

10
b/BCFtools/BCFtools-1.2-intel-2015a.eb
View File

@ -11,7 +11,8 @@ toolchain = {'name': 'intel', 'version': '2015a'}
toolchainopts = {'optarch': True, 'pic': True} toolchainopts = {'optarch': True, 'pic': True}
sources = [SOURCELOWER_TAR_BZ2] sources = [SOURCELOWER_TAR_BZ2]
source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] source_urls = [
'https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch']
@ -32,7 +33,12 @@ postinstallcmds = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']], 'files': [
'bin/%s' %
x for x in [
'bcftools',
'plot-vcfstats',
'vcfutils.pl']],
'dirs': ['lib/plugins'], 'dirs': ['lib/plugins'],
} }

10
b/BCFtools/BCFtools-1.3-foss-2015g.eb
View File

@ -11,7 +11,8 @@ toolchain = {'name': 'foss', 'version': '2015g'}
toolchainopts = {'optarch': True, 'pic': True} toolchainopts = {'optarch': True, 'pic': True}
sources = [SOURCELOWER_TAR_BZ2] sources = [SOURCELOWER_TAR_BZ2]
source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] source_urls = [
'https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
dependencies = [ dependencies = [
('HTSlib', '1.3'), ('HTSlib', '1.3'),
@ -30,7 +31,12 @@ postinstallcmds = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']], 'files': [
'bin/%s' %
x for x in [
'bcftools',
'plot-vcfstats',
'vcfutils.pl']],
'dirs': ['lib/plugins'], 'dirs': ['lib/plugins'],
} }

10
b/BCFtools/BCFtools-1.3-foss-2016a.eb
View File

@ -11,7 +11,8 @@ toolchain = {'name': 'foss', 'version': '2016a'}
toolchainopts = {'optarch': True, 'pic': True} toolchainopts = {'optarch': True, 'pic': True}
sources = [SOURCELOWER_TAR_BZ2] sources = [SOURCELOWER_TAR_BZ2]
source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] source_urls = [
'https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch'] patches = ['%(name)s-%(version)s_extHTSlib_Makefile.patch']
@ -34,7 +35,12 @@ postinstallcmds = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']], 'files': [
'bin/%s' %
x for x in [
'bcftools',
'plot-vcfstats',
'vcfutils.pl']],
'dirs': ['lib/plugins'], 'dirs': ['lib/plugins'],
} }

10
b/BCFtools/BCFtools-1.3-intel-2016a.eb
View File

@ -11,7 +11,8 @@ toolchain = {'name': 'intel', 'version': '2016a'}
toolchainopts = {'optarch': True, 'pic': True} toolchainopts = {'optarch': True, 'pic': True}
sources = [SOURCELOWER_TAR_BZ2] sources = [SOURCELOWER_TAR_BZ2]
source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] source_urls = [
'https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
patches = ['BCFtools-%(version)s_extHTSlib_Makefile.patch'] patches = ['BCFtools-%(version)s_extHTSlib_Makefile.patch']
@ -34,7 +35,12 @@ postinstallcmds = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']], 'files': [
'bin/%s' %
x for x in [
'bcftools',
'plot-vcfstats',
'vcfutils.pl']],
'dirs': ['lib/plugins'], 'dirs': ['lib/plugins'],
} }

3
b/BCFtools/BCFtools-1.3.1-goolf-1.7.20.eb
View File

@ -14,7 +14,8 @@ description = """BCFtools is a set of utilities that manipulate variant calls in
toolchain = {'name': 'goolf', 'version': '1.7.20'} toolchain = {'name': 'goolf', 'version': '1.7.20'}
source_urls = ['https://github.com/samtools/bcftools/releases/download/%(version)s/'] source_urls = [
'https://github.com/samtools/bcftools/releases/download/%(version)s/']
sources = [SOURCELOWER_TAR_BZ2] sources = [SOURCELOWER_TAR_BZ2]
dependencies = [ dependencies = [

10
b/BCFtools/BCFtools-1.6-intel-2017a.eb
View File

@ -11,7 +11,8 @@ toolchain = {'name': 'intel', 'version': '2017a'}
toolchainopts = {'optarch': True, 'pic': True} toolchainopts = {'optarch': True, 'pic': True}
sources = [SOURCELOWER_TAR_BZ2] sources = [SOURCELOWER_TAR_BZ2]
source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] source_urls = [
'https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
#patches = ['BCFtools-%(version)s_extHTSlib_Makefile.patch'] #patches = ['BCFtools-%(version)s_extHTSlib_Makefile.patch']
@ -35,7 +36,12 @@ postinstallcmds = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']], 'files': [
'bin/%s' %
x for x in [
'bcftools',
'plot-vcfstats',
'vcfutils.pl']],
'dirs': ['lib/plugins'], 'dirs': ['lib/plugins'],
} }

10
b/BCFtools/BCFtools-1.8-intel-2017a.eb
View File

@ -11,7 +11,8 @@ toolchain = {'name': 'intel', 'version': '2017a'}
toolchainopts = {'optarch': True, 'pic': True} toolchainopts = {'optarch': True, 'pic': True}
sources = [SOURCELOWER_TAR_BZ2] sources = [SOURCELOWER_TAR_BZ2]
source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s'] source_urls = [
'https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
#patches = ['BCFtools-%(version)s_extHTSlib_Makefile.patch'] #patches = ['BCFtools-%(version)s_extHTSlib_Makefile.patch']
@ -35,7 +36,12 @@ postinstallcmds = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']], 'files': [
'bin/%s' %
x for x in [
'bcftools',
'plot-vcfstats',
'vcfutils.pl']],
'dirs': ['lib/plugins'], 'dirs': ['lib/plugins'],
} }

3
b/BLAST/BLAST-2.2.26-Linux_x86_64.eb
View File

@ -16,7 +16,8 @@ description = """Basic Local Alignment Search Tool, or BLAST, is an algorithm
toolchain = {'name': 'dummy', 'version': 'dummy'} toolchain = {'name': 'dummy', 'version': 'dummy'}
source_urls = ['http://ftp.ncbi.nlm.nih.gov/blast/executables/release/%(version)s/'] source_urls = [
'http://ftp.ncbi.nlm.nih.gov/blast/executables/release/%(version)s/']
sources = ['%(namelower)s-%(version)s-x64-linux.tar.gz'] sources = ['%(namelower)s-%(version)s-x64-linux.tar.gz']
sanity_check_paths = { sanity_check_paths = {

28
b/BLAT/BLAT-3.5-goolf-1.4.10.eb
View File

@ -22,11 +22,33 @@ dependencies = [('libpng', '1.6.2')]
buildopts = 'CC="$CC" COPT= L="$LIBS"' buildopts = 'CC="$CC" COPT= L="$LIBS"'
files_to_copy = ["bin", "blat", "gfClient", "gfServer", "hg", "inc", "jkOwnLib", "lib", "utils", "webBlat"] files_to_copy = [
"bin",
"blat",
"gfClient",
"gfServer",
"hg",
"inc",
"jkOwnLib",
"lib",
"utils",
"webBlat"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/%s" % x for x in ['blat', 'faToNib', 'faToTwoBit', 'gfClient', 'gfServer', 'nibFrag', 'files': [
'pslPretty', 'pslReps', 'pslSort', 'twoBitInfo', 'twoBitToFa']], "bin/%s" %
x for x in [
'blat',
'faToNib',
'faToTwoBit',
'gfClient',
'gfServer',
'nibFrag',
'pslPretty',
'pslReps',
'pslSort',
'twoBitInfo',
'twoBitToFa']],
'dirs': files_to_copy, 'dirs': files_to_copy,
} }

28
b/BLAT/BLAT-3.5-ictce-5.5.0-libpng-1.6.9.eb
View File

@ -26,11 +26,33 @@ dependencies = [(libpng, libpng_ver)]
buildopts = 'CC="$CC" COPT= L="$LIBS"' buildopts = 'CC="$CC" COPT= L="$LIBS"'
files_to_copy = ["bin", "blat", "gfClient", "gfServer", "hg", "inc", "jkOwnLib", "lib", "utils", "webBlat"] files_to_copy = [
"bin",
"blat",
"gfClient",
"gfServer",
"hg",
"inc",
"jkOwnLib",
"lib",
"utils",
"webBlat"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/%s" % x for x in ['blat', 'faToNib', 'faToTwoBit', 'gfClient', 'gfServer', 'nibFrag', 'files': [
'pslPretty', 'pslReps', 'pslSort', 'twoBitInfo', 'twoBitToFa']], "bin/%s" %
x for x in [
'blat',
'faToNib',
'faToTwoBit',
'gfClient',
'gfServer',
'nibFrag',
'pslPretty',
'pslReps',
'pslSort',
'twoBitInfo',
'twoBitToFa']],
'dirs': files_to_copy, 'dirs': files_to_copy,
} }

28
b/BLAT/BLAT-3.5-ictce-5.5.0.eb
View File

@ -22,11 +22,33 @@ dependencies = [('libpng', '1.6.6')]
buildopts = 'CC="$CC" COPT= L="$LIBS"' buildopts = 'CC="$CC" COPT= L="$LIBS"'
files_to_copy = ["bin", "blat", "gfClient", "gfServer", "hg", "inc", "jkOwnLib", "lib", "utils", "webBlat"] files_to_copy = [
"bin",
"blat",
"gfClient",
"gfServer",
"hg",
"inc",
"jkOwnLib",
"lib",
"utils",
"webBlat"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/%s" % x for x in ['blat', 'faToNib', 'faToTwoBit', 'gfClient', 'gfServer', 'nibFrag', 'files': [
'pslPretty', 'pslReps', 'pslSort', 'twoBitInfo', 'twoBitToFa']], "bin/%s" %
x for x in [
'blat',
'faToNib',
'faToTwoBit',
'gfClient',
'gfServer',
'nibFrag',
'pslPretty',
'pslReps',
'pslSort',
'twoBitInfo',
'twoBitToFa']],
'dirs': files_to_copy, 'dirs': files_to_copy,
} }

3
b/BLCR/BLCR-0.8.5-GNU-5.1.0-2.25.eb
View File

@ -13,7 +13,8 @@ toolchain = {'name': 'GNU', 'version': '5.1.0-2.25'}
toolchainopts = {'optarch': True, 'pic': True} toolchainopts = {'optarch': True, 'pic': True}
sources = [SOURCELOWER_TAR_GZ] sources = [SOURCELOWER_TAR_GZ]
source_urls = [('http://crd.lbl.gov/assets/Uploads/FTG/Projects/CheckpointRestart/downloads')] source_urls = [
('http://crd.lbl.gov/assets/Uploads/FTG/Projects/CheckpointRestart/downloads')]
sanity_check_paths = { sanity_check_paths = {
'files': ['include/libcr.h'], 'files': ['include/libcr.h'],

1
b/BXH_XCEDE_TOOLS/BXH_XCEDE_TOOLS-1.11.1.eb
View File

@ -25,4 +25,3 @@ sanity_check_paths = {
} }
moduleclass = 'bio' moduleclass = 'bio'

3
b/BayeScEnv/BayeScEnv-1.1-foss-2016a.eb
View File

@ -20,7 +20,8 @@ sources = ['v%(version)s.tar.gz']
start_dir = 'source' start_dir = 'source'
files_to_copy = [(['source/bayescenv'], 'bin'), 'test', 'COPYING', 'README.md', 'ChangeLog'] files_to_copy = [(['source/bayescenv'], 'bin'), 'test',
'COPYING', 'README.md', 'ChangeLog']
parallel = 1 parallel = 1

3
b/BayeScEnv/BayeScEnv-1.1-goolf-1.4.10.eb
View File

@ -19,7 +19,8 @@ sources = ['v%(version)s.tar.gz']
start_dir = 'source' start_dir = 'source'
files_to_copy = [(['source/bayescenv'], 'bin'), 'test', 'COPYING', 'README.md', 'ChangeLog'] files_to_copy = [(['source/bayescenv'], 'bin'), 'test',
'COPYING', 'README.md', 'ChangeLog']
parallel = 1 parallel = 1

3
b/BayeScan/BayeScan-2.1-goolf-1.4.10.eb
View File

@ -12,7 +12,8 @@ homepage = 'http://cmpg.unibe.ch/software/BayeScan/'
description = """BayeScan aims at identifying candidate loci under natural selection from genetic data, description = """BayeScan aims at identifying candidate loci under natural selection from genetic data,
using differences in allele frequencies between populations.""" using differences in allele frequencies between populations."""
# BayeScan makefile is hardcoded to use g++. In case you want to use a non-gcc toolchain you will need to patch the makefile # BayeScan makefile is hardcoded to use g++. In case you want to use a
# non-gcc toolchain you will need to patch the makefile
toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchain = {'name': 'goolf', 'version': '1.4.10'}
toolchainopts = {'openmp': True} toolchainopts = {'openmp': True}

3
b/BayesAss/BayesAss-3.0.4-foss-2016a.eb
View File

@ -11,7 +11,8 @@ BayesAss: Bayesian Inference of Recent Migration Using Multilocus Genotypes
toolchain = {'name': 'foss', 'version': '2016a'} toolchain = {'name': 'foss', 'version': '2016a'}
sources = ['BA3-%(version)s.tar.gz'] sources = ['BA3-%(version)s.tar.gz']
source_urls = ['http://downloads.sourceforge.net/project/bayesass/BA3/%(version)s/src/'] source_urls = [
'http://downloads.sourceforge.net/project/bayesass/BA3/%(version)s/src/']
dependencies = [ dependencies = [
('GSL', '2.1') ('GSL', '2.1')

3
b/Bazel/Bazel-0.4.4.eb
View File

@ -13,7 +13,8 @@ It is used to build the majority of Google's software."""
toolchain = {'name': 'dummy', 'version': 'dummy'} toolchain = {'name': 'dummy', 'version': 'dummy'}
sources = ['%(namelower)s-%(version)s-dist.zip'] sources = ['%(namelower)s-%(version)s-dist.zip']
source_urls = ['https://github.com/bazelbuild/bazel/releases/download/%(version)s'] source_urls = [
'https://github.com/bazelbuild/bazel/releases/download/%(version)s']
dependencies = [ dependencies = [
('Java', '1.8.0_121'), ('Java', '1.8.0_121'),

3
b/Bazel/Bazel-0.5.0-GCC-4.9.3-tf.eb
View File

@ -13,7 +13,8 @@ It is used to build the majority of Google's software."""
toolchain = {'name': 'GCC', 'version': '4.9.3-tf'} toolchain = {'name': 'GCC', 'version': '4.9.3-tf'}
sources = ['%(namelower)s-%(version)s-dist.zip'] sources = ['%(namelower)s-%(version)s-dist.zip']
source_urls = ['https://github.com/bazelbuild/bazel/releases/download/%(version)s'] source_urls = [
'https://github.com/bazelbuild/bazel/releases/download/%(version)s']
dependencies = [ dependencies = [
('Java', '1.8.0_121', '', True), ('Java', '1.8.0_121', '', True),

3
b/Bazel/Bazel-0.5.0-GCC-7.1.0-2.28.eb
View File

@ -13,7 +13,8 @@ It is used to build the majority of Google's software."""
toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'} toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'}
sources = ['%(namelower)s-%(version)s-dist.zip'] sources = ['%(namelower)s-%(version)s-dist.zip']
source_urls = ['https://github.com/bazelbuild/bazel/releases/download/%(version)s'] source_urls = [
'https://github.com/bazelbuild/bazel/releases/download/%(version)s']
dependencies = [ dependencies = [
('Java', '1.8.0_121', '', True), ('Java', '1.8.0_121', '', True),

3
b/Bazel/Bazel-0.5.1-GCC-7.1.0-2.28.eb
View File

@ -13,7 +13,8 @@ It is used to build the majority of Google's software."""
toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'} toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'}
sources = ['%(namelower)s-%(version)s-dist.zip'] sources = ['%(namelower)s-%(version)s-dist.zip']
source_urls = ['https://github.com/bazelbuild/bazel/releases/download/%(version)s'] source_urls = [
'https://github.com/bazelbuild/bazel/releases/download/%(version)s']
patches = [ patches = [
('cc_configure.patch'), ('cc_configure.patch'),

3
b/Bazel/Bazel-0.5.4-GCC-7.1.0-2.28.eb
View File

@ -13,7 +13,8 @@ It is used to build the majority of Google's software."""
toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'} toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'}
sources = ['%(namelower)s-%(version)s-dist.zip'] sources = ['%(namelower)s-%(version)s-dist.zip']
source_urls = ['https://github.com/bazelbuild/bazel/releases/download/%(version)s'] source_urls = [
'https://github.com/bazelbuild/bazel/releases/download/%(version)s']
patches = [ patches = [
('cc_configure.patch'), ('cc_configure.patch'),

3
b/Bazel/Bazel-0.7.0-GCC-6.3.0-2.27.eb
View File

@ -7,7 +7,8 @@ It is used to build the majority of Google's software."""
toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'} toolchain = {'name': 'GCC', 'version': '6.3.0-2.27'}
source_urls = ['https://github.com/bazelbuild/bazel/releases/download/%(version)s'] source_urls = [
'https://github.com/bazelbuild/bazel/releases/download/%(version)s']
sources = ['%(namelower)s-%(version)s-dist.zip'] sources = ['%(namelower)s-%(version)s-dist.zip']
checksums = ['a084a9c5d843e2343bf3f319154a48abe3d35d52feb0ad45dec427a1c4ffc416'] checksums = ['a084a9c5d843e2343bf3f319154a48abe3d35d52feb0ad45dec427a1c4ffc416']

3
b/Bazel/Bazel-0.7.0-GCC-7.1.0-2.28.eb
View File

@ -7,7 +7,8 @@ It is used to build the majority of Google's software."""
toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'} toolchain = {'name': 'GCC', 'version': '7.1.0-2.28'}
source_urls = ['https://github.com/bazelbuild/bazel/releases/download/%(version)s'] source_urls = [
'https://github.com/bazelbuild/bazel/releases/download/%(version)s']
sources = ['%(namelower)s-%(version)s-dist.zip'] sources = ['%(namelower)s-%(version)s-dist.zip']
checksums = ['a084a9c5d843e2343bf3f319154a48abe3d35d52feb0ad45dec427a1c4ffc416'] checksums = ['a084a9c5d843e2343bf3f319154a48abe3d35d52feb0ad45dec427a1c4ffc416']

3
b/Beast/Beast-1.8.4.eb
View File

@ -18,7 +18,8 @@ description = """ BEAST is a cross-platform program for Bayesian MCMC analysis o
toolchain = {'name': 'dummy', 'version': ''} toolchain = {'name': 'dummy', 'version': ''}
source_urls= ['https://github.com/beast-dev/beast-mcmc/releases/download/v%(version)s/'] source_urls = [
'https://github.com/beast-dev/beast-mcmc/releases/download/v%(version)s/']
sources = ['BEASTv%(version)s.tgz'] sources = ['BEASTv%(version)s.tgz']
dependencies = [ dependencies = [

1
b/BioPerl/BioPerl-1.6.924-foss-2016a-Perl-5.22.1.eb
View File

@ -37,4 +37,3 @@ modextrapaths = {
} }
moduleclass = 'bio' moduleclass = 'bio'

10
b/Biopython/Biopython-1.61-goolf-1.4.10-Python-2.7.3.eb
View File

@ -34,11 +34,11 @@ dependencies = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': [], 'files': [], 'dirs': [
'dirs': ['lib/python%s/site-packages/Bio' % pyshortver, 'lib/python%s/site-packages/Bio' %
'lib/python%s/site-packages/biopython-%s-py%s.egg-info' % (pyshortver, version, pyshortver), pyshortver, 'lib/python%s/site-packages/biopython-%s-py%s.egg-info' %
'lib/python%s/site-packages/BioSQL' % pyshortver] (pyshortver, version, pyshortver), 'lib/python%s/site-packages/BioSQL' %
} pyshortver]}
options = {'modulename': 'Bio'} options = {'modulename': 'Bio'}

10
b/Biopython/Biopython-1.61-ictce-5.3.0-Python-2.7.3.eb
View File

@ -34,11 +34,11 @@ dependencies = [
] ]
sanity_check_paths = { sanity_check_paths = {
'files': [], 'files': [], 'dirs': [
'dirs': ['lib/python%s/site-packages/Bio' % pyshortver, 'lib/python%s/site-packages/Bio' %
'lib/python%s/site-packages/biopython-%s-py%s.egg-info' % (pyshortver, version, pyshortver), pyshortver, 'lib/python%s/site-packages/biopython-%s-py%s.egg-info' %
'lib/python%s/site-packages/BioSQL' % pyshortver] (pyshortver, version, pyshortver), 'lib/python%s/site-packages/BioSQL' %
} pyshortver]}
options = {'modulename': 'Bio'} options = {'modulename': 'Bio'}

5
b/Biopython/Biopython-1.65-foss-2016a-Python-2.7.11.eb
View File

@ -29,8 +29,9 @@ dependencies = [
sanity_check_paths = { sanity_check_paths = {
'files': [], 'files': [],
'dirs': ['lib/python%(pyshortver)s/site-packages/Bio', 'lib/python%(pyshortver)s/site-packages/BioSQL'] 'dirs': [
} 'lib/python%(pyshortver)s/site-packages/Bio',
'lib/python%(pyshortver)s/site-packages/BioSQL']}
options = {'modulename': 'Bio'} options = {'modulename': 'Bio'}

5
b/Biopython/Biopython-1.68-foss-2016b-Python-2.7.12.eb
View File

@ -33,8 +33,9 @@ dependencies = [
sanity_check_paths = { sanity_check_paths = {
'files': [], 'files': [],
'dirs': ['lib/python%(pyshortver)s/site-packages/Bio', 'lib/python%(pyshortver)s/site-packages/BioSQL'] 'dirs': [
} 'lib/python%(pyshortver)s/site-packages/Bio',
'lib/python%(pyshortver)s/site-packages/BioSQL']}
options = {'modulename': 'Bio'} options = {'modulename': 'Bio'}

5
b/Biopython/Biopython-1.68-intel-2016b-Python-2.7.12.eb
View File

@ -29,8 +29,9 @@ dependencies = [
sanity_check_paths = { sanity_check_paths = {
'files': [], 'files': [],
'dirs': ['lib/python%(pyshortver)s/site-packages/Bio', 'lib/python%(pyshortver)s/site-packages/BioSQL'] 'dirs': [
} 'lib/python%(pyshortver)s/site-packages/Bio',
'lib/python%(pyshortver)s/site-packages/BioSQL']}
options = {'modulename': 'Bio'} options = {'modulename': 'Bio'}

5
b/Biopython/Biopython-1.68-intel-2016b-Python-3.5.2.eb
View File

@ -29,8 +29,9 @@ dependencies = [
sanity_check_paths = { sanity_check_paths = {
'files': [], 'files': [],
'dirs': ['lib/python%(pyshortver)s/site-packages/Bio', 'lib/python%(pyshortver)s/site-packages/BioSQL'] 'dirs': [
} 'lib/python%(pyshortver)s/site-packages/Bio',
'lib/python%(pyshortver)s/site-packages/BioSQL']}
options = {'modulename': 'Bio'} options = {'modulename': 'Bio'}

6
b/BoltzTraP2/BoltzTraP2-18.1.1-Py-3.6.eb
View File

@ -28,9 +28,7 @@ builddependencies = [
options = {'modulename': 'BoltzTraP2'} options = {'modulename': 'BoltzTraP2'}
sanity_check_paths = { sanity_check_paths = {'files': [], 'dirs': [
'files': [], 'lib/python3.6/site-packages/%(name)s-%(version)s-py3.6-linux-x86_64.egg/%(name)s'], }
'dirs': ['lib/python3.6/site-packages/%(name)s-%(version)s-py3.6-linux-x86_64.egg/%(name)s'],
}
moduleclass = 'python' moduleclass = 'python'

6
b/BoltzTraP2/BoltzTraP2-18.1.2-Py-3.6.eb
View File

@ -28,9 +28,7 @@ builddependencies = [
options = {'modulename': 'BoltzTraP2'} options = {'modulename': 'BoltzTraP2'}
sanity_check_paths = { sanity_check_paths = {'files': [], 'dirs': [
'files': [], 'lib/python3.6/site-packages/%(name)s-%(version)s-py3.6-linux-x86_64.egg/%(name)s'], }
'dirs': ['lib/python3.6/site-packages/%(name)s-%(version)s-py3.6-linux-x86_64.egg/%(name)s'],
}
moduleclass = 'python' moduleclass = 'python'

4
b/Bowtie2/Bowtie2-2.0.5-goolf-1.4.10.eb
View File

@ -18,7 +18,9 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchain = {'name': 'goolf', 'version': '1.4.10'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [
(["bowtie2", "bowtie2-align", "bowtie2-build", "bowtie2-inspect"], 'bin'), (["bowtie2", "bowtie2-align", "bowtie2-build", "bowtie2-inspect"], 'bin'),

4
b/Bowtie2/Bowtie2-2.0.6-goolf-1.4.10.eb
View File

@ -18,7 +18,9 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchain = {'name': 'goolf', 'version': '1.4.10'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [
(["bowtie2", "bowtie2-align", "bowtie2-build", "bowtie2-inspect"], 'bin'), (["bowtie2", "bowtie2-align", "bowtie2-build", "bowtie2-inspect"], 'bin'),

4
b/Bowtie2/Bowtie2-2.1.0-goolf-1.4.10.eb
View File

@ -18,7 +18,9 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchain = {'name': 'goolf', 'version': '1.4.10'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [
(["bowtie2", "bowtie2-align", "bowtie2-build", "bowtie2-inspect"], 'bin'), (["bowtie2", "bowtie2-align", "bowtie2-build", "bowtie2-inspect"], 'bin'),

26
b/Bowtie2/Bowtie2-2.2.0-goolf-1.4.10.eb
View File

@ -18,15 +18,29 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchain = {'name': 'goolf', 'version': '1.4.10'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

29
b/Bowtie2/Bowtie2-2.2.2-goolf-1.4.10.eb
View File

@ -18,15 +18,32 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchain = {'name': 'goolf', 'version': '1.4.10'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts",
"MANUAL",
"MANUAL.markdown",
"NEWS"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

29
b/Bowtie2/Bowtie2-2.2.4-goolf-1.4.10.eb
View File

@ -20,15 +20,32 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'goolf', 'version': '1.4.10'} toolchain = {'name': 'goolf', 'version': '1.4.10'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts",
"MANUAL",
"MANUAL.markdown",
"NEWS"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

29
b/Bowtie2/Bowtie2-2.2.5-goolf-1.7.20.eb
View File

@ -20,15 +20,32 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'goolf', 'version': '1.7.20'} toolchain = {'name': 'goolf', 'version': '1.7.20'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts",
"MANUAL",
"MANUAL.markdown",
"NEWS"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

29
b/Bowtie2/Bowtie2-2.2.5-intel-2015a.eb
View File

@ -20,15 +20,32 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'intel', 'version': '2015a'} toolchain = {'name': 'intel', 'version': '2015a'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts",
"MANUAL",
"MANUAL.markdown",
"NEWS"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

29
b/Bowtie2/Bowtie2-2.2.6-foss-2015b.eb
View File

@ -20,15 +20,32 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'foss', 'version': '2015b'} toolchain = {'name': 'foss', 'version': '2015b'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts",
"MANUAL",
"MANUAL.markdown",
"NEWS"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

29
b/Bowtie2/Bowtie2-2.2.6-intel-2015b.eb
View File

@ -20,15 +20,32 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'intel', 'version': '2015b'} toolchain = {'name': 'intel', 'version': '2015b'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts",
"MANUAL",
"MANUAL.markdown",
"NEWS"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

29
b/Bowtie2/Bowtie2-2.2.7-foss-2015b.eb
View File

@ -22,15 +22,32 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'foss', 'version': '2015b'} toolchain = {'name': 'foss', 'version': '2015b'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts",
"MANUAL",
"MANUAL.markdown",
"NEWS"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

29
b/Bowtie2/Bowtie2-2.2.8-foss-2015b.eb
View File

@ -22,15 +22,32 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'foss', 'version': '2015b'} toolchain = {'name': 'foss', 'version': '2015b'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts",
"MANUAL",
"MANUAL.markdown",
"NEWS"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

29
b/Bowtie2/Bowtie2-2.2.8-foss-2016a.eb
View File

@ -22,15 +22,32 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'foss', 'version': '2016a'} toolchain = {'name': 'foss', 'version': '2016a'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts",
"MANUAL",
"MANUAL.markdown",
"NEWS"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

29
b/Bowtie2/Bowtie2-2.2.9-foss-2016a.eb
View File

@ -22,15 +22,32 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'foss', 'version': '2016a'} toolchain = {'name': 'foss', 'version': '2016a'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts",
"MANUAL",
"MANUAL.markdown",
"NEWS"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

29
b/Bowtie2/Bowtie2-2.2.9-goolf-1.7.20.eb
View File

@ -22,15 +22,32 @@ description = """ Bowtie 2 is an ultrafast and memory-efficient tool for alignin
toolchain = {'name': 'goolf', 'version': '1.7.20'} toolchain = {'name': 'goolf', 'version': '1.7.20'}
sources = ['%(namelower)s-%(version)s-source.zip'] sources = ['%(namelower)s-%(version)s-source.zip']
source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')] source_urls = [
('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s',
'download')]
files_to_copy = [ files_to_copy = [(["bowtie2",
(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s", "bowtie2-align-l",
"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'), "bowtie2-align-s",
"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"] "bowtie2-build",
"bowtie2-build-l",
"bowtie2-build-s",
"bowtie2-inspect",
"bowtie2-inspect-l",
"bowtie2-inspect-s"],
'bin'),
"doc",
"example",
"scripts",
"MANUAL",
"MANUAL.markdown",
"NEWS"]
sanity_check_paths = { sanity_check_paths = {
'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"], 'files': [
"bin/bowtie2-align-l",
"bin/bowtie2-build",
"bin/bowtie2-inspect"],
'dirs': [], 'dirs': [],
} }

11
b/Bullet/Bullet-2.83.7-foss-2016a.eb
View File

@ -19,10 +19,13 @@ builddependencies = [('CMake', '3.5.2')]
configopts = "-DBUILD_SHARED_LIBS=ON" configopts = "-DBUILD_SHARED_LIBS=ON"
sanity_check_paths = { sanity_check_paths = {
'files': ['include/bullet/btBullet%sCommon.h' % x for x in ['Collision', 'Dynamics']] 'files': [
+ ['lib/libBullet%s.%s' % (x,SHLIB_EXT) for x in ['Collision', 'Dynamics']], 'include/bullet/btBullet%sCommon.h' %
'dirs': [], x for x in [
} 'Collision', 'Dynamics']] + [
'lib/libBullet%s.%s' %
(x, SHLIB_EXT) for x in [
'Collision', 'Dynamics']], 'dirs': [], }
modextrapaths = {'CPATH': 'include/bullet'} modextrapaths = {'CPATH': 'include/bullet'}

11
b/Bullet/Bullet-2.83.7-intel-2016a.eb
View File

@ -19,10 +19,13 @@ builddependencies = [('CMake', '3.5.2')]
configopts = "-DBUILD_SHARED_LIBS=ON" configopts = "-DBUILD_SHARED_LIBS=ON"
sanity_check_paths = { sanity_check_paths = {
'files': ['include/bullet/btBullet%sCommon.h' % x for x in ['Collision', 'Dynamics']] 'files': [
+ ['lib/libBullet%s.%s' % (x,SHLIB_EXT) for x in ['Collision', 'Dynamics']], 'include/bullet/btBullet%sCommon.h' %
'dirs': [], x for x in [
} 'Collision', 'Dynamics']] + [
'lib/libBullet%s.%s' %
(x, SHLIB_EXT) for x in [
'Collision', 'Dynamics']], 'dirs': [], }
modextrapaths = {'CPATH': 'include/bullet'} modextrapaths = {'CPATH': 'include/bullet'}

3
b/bbcp/bbcp-12.01.30.00.0-amd64_linux26.eb
View File

@ -25,7 +25,8 @@ description = """BBCP is an alternative to Gridftp when transferring large amoun
toolchain = {'name': 'dummy', 'version': 'dummy'} toolchain = {'name': 'dummy', 'version': 'dummy'}
# fi. http://www.slac.stanford.edu/~abh/bbcp/bin/amd64_linux26/bbcp # VERY poor way of distributing software # fi. http://www.slac.stanford.edu/~abh/bbcp/bin/amd64_linux26/bbcp # VERY
# poor way of distributing software
sources = [name] sources = [name]
source_urls = [homepage + 'bin/%s' % versionsuffix] source_urls = [homepage + 'bin/%s' % versionsuffix]

6
b/bcl2fastq2/bcl2fastq2-2.20.0-intel-2017a-Python-2.7.13.eb
View File

@ -10,10 +10,12 @@ description = """bcl2fastq Conversion Software both demultiplexes data and conve
toolchain = {'name': 'intel', 'version': '2017a'} toolchain = {'name': 'intel', 'version': '2017a'}
source_urls = ['ftp://webdata2:webdata2@ussd-ftp.illumina.com/downloads/software/bcl2fastq/'] source_urls = [
'ftp://webdata2:webdata2@ussd-ftp.illumina.com/downloads/software/bcl2fastq/']
sources = [{ sources = [{
'filename': '%(name)s-v%(version)s-tar.zip', 'filename': '%(name)s-v%(version)s-tar.zip',
'extract_cmd': 'unzip -p %s | tar -xzvf -', # source file is a .zip that contains a .tar.gz # source file is a .zip that contains a .tar.gz
'extract_cmd': 'unzip -p %s | tar -xzvf -',
}] }]
start_dir = 'src' start_dir = 'src'

6
b/bcrypt/bcrypt-3.1.4-Py-2.7.eb
View File

@ -16,9 +16,7 @@ dependencies = [
('six', '1.11.0'), ('six', '1.11.0'),
] ]
sanity_check_paths = { sanity_check_paths = {'files': [], 'dirs': [
'files': [], 'lib/python2.7/site-packages/%(name)s-%(version)s-py2.7-linux-x86_64.egg'], }
'dirs': ['lib/python2.7/site-packages/%(name)s-%(version)s-py2.7-linux-x86_64.egg'],
}
moduleclass = 'python' moduleclass = 'python'

5
b/binutils/binutils-2.27-GCCcore-6.2.0.eb
View File

@ -14,11 +14,12 @@ builddependencies = [
('Bison', '3.0.4'), ('Bison', '3.0.4'),
# zlib required, but being linked in statically, so not a runtime dep # zlib required, but being linked in statically, so not a runtime dep
('zlib', '1.2.8'), ('zlib', '1.2.8'),
# use same binutils version that was used when building GCC toolchain, to 'bootstrap' this binutils # use same binutils version that was used when building GCC toolchain, to
# 'bootstrap' this binutils
('binutils', version, '', True) ('binutils', version, '', True)
] ]
##--enable-share # --enable-share
configopts = '--enable-share' configopts = '--enable-share'
moduleclass = 'tools' moduleclass = 'tools'

3
b/binutils/binutils-2.27-GCCcore-6.3.0.eb
View File

@ -14,7 +14,8 @@ builddependencies = [
('Bison', '3.0.4', '', True), ('Bison', '3.0.4', '', True),
# zlib required, but being linked in statically, so not a runtime dep # zlib required, but being linked in statically, so not a runtime dep
('zlib', '1.2.11', '', True), ('zlib', '1.2.11', '', True),
# use same binutils version that was used when building GCC toolchain, to 'bootstrap' this binutils # use same binutils version that was used when building GCC toolchain, to
# 'bootstrap' this binutils
('binutils', version, '', True) ('binutils', version, '', True)
] ]

2
b/binutils/binutils-2.27.eb
View File

@ -16,7 +16,7 @@ builddependencies = [
('zlib', '1.2.11'), ('zlib', '1.2.11'),
] ]
##--enable-share # --enable-share
configopts = '--enable-share' configopts = '--enable-share'

3
b/binutils/binutils-2.28-GCCcore-7.1.0.eb
View File

@ -14,7 +14,8 @@ builddependencies = [
('Bison', '3.0.4', '', True), ('Bison', '3.0.4', '', True),
# zlib required, but being linked in statically, so not a runtime dep # zlib required, but being linked in statically, so not a runtime dep
('zlib', '1.2.11', '', True), ('zlib', '1.2.11', '', True),
# use same binutils version that was used when building GCC toolchain, to 'bootstrap' this binutils # use same binutils version that was used when building GCC toolchain, to
# 'bootstrap' this binutils
('binutils', version, '', True) ('binutils', version, '', True)
] ]

3
b/binutils/binutils-2.30-GCCcore-8.1.0.eb
View File

@ -16,7 +16,8 @@ builddependencies = [
('Bison', '3.0.4', '', True), ('Bison', '3.0.4', '', True),
# zlib required, but being linked in statically, so not a runtime dep # zlib required, but being linked in statically, so not a runtime dep
('zlib', '1.2.11', '', True), ('zlib', '1.2.11', '', True),
# use same binutils version that was used when building GCC toolchain, to 'bootstrap' this binutils # use same binutils version that was used when building GCC toolchain, to
# 'bootstrap' this binutils
('binutils', version, '', True) ('binutils', version, '', True)
] ]

3
b/bzip2/bzip2-1.0.6.eb
View File

@ -14,7 +14,8 @@ source_urls = ['http://www.bzip.org/%(version)s/']
buildopts = "CC=gcc CFLAGS='-Wall -Winline -O3 -fPIC -g $(BIGFILES)'" buildopts = "CC=gcc CFLAGS='-Wall -Winline -O3 -fPIC -g $(BIGFILES)'"
# building of shared libraries doesn't work on OS X (where 'gcc' is actually Clang...) # building of shared libraries doesn't work on OS X (where 'gcc' is
# actually Clang...)
with_shared_libs = OS_TYPE == 'Linux' with_shared_libs = OS_TYPE == 'Linux'
moduleclass = 'tools' moduleclass = 'tools'

3
c/CASMcode/CASMcode-0.2.1-foss-2016a-Python-2.7.13.eb
View File

@ -17,7 +17,8 @@ degrees of freedom involved in structural phase transitions."""
toolchain = {'name': 'foss', 'version': '2016a'} toolchain = {'name': 'foss', 'version': '2016a'}
source_urls = ['https://github.com/prisms-center/CASMcode/releases/download/v%(version)s/'] source_urls = [
'https://github.com/prisms-center/CASMcode/releases/download/v%(version)s/']
sources = ['casm-v%(version)s.tar.gz'] sources = ['casm-v%(version)s.tar.gz']
dependencies = [ dependencies = [

3
c/CASMcode/CASMcode-0.2.1-intel-2017a-Python-2.7.13.eb
View File

@ -17,7 +17,8 @@ degrees of freedom involved in structural phase transitions."""
toolchain = {'name': 'intel', 'version': '2017a'} toolchain = {'name': 'intel', 'version': '2017a'}
source_urls = ['https://github.com/prisms-center/CASMcode/releases/download/v%(version)s/'] source_urls = [
'https://github.com/prisms-center/CASMcode/releases/download/v%(version)s/']
sources = ['casm-v%(version)s.tar.gz'] sources = ['casm-v%(version)s.tar.gz']
patches = ['CASMcode.patch'] patches = ['CASMcode.patch']

3
c/CGAL/CGAL-4.11.1-foss-2017b.eb
View File

@ -10,7 +10,8 @@ description = """The goal of the CGAL Open Source Project is to provide easy acc
toolchain = {'name': 'foss', 'version': '2017b'} toolchain = {'name': 'foss', 'version': '2017b'}
toolchainopts = {'strict': True} toolchainopts = {'strict': True}
source_urls = ['https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-%(version)s'] source_urls = [
'https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-%(version)s']
sources = [SOURCE_TAR_XZ] sources = [SOURCE_TAR_XZ]
checksums = ['fb152fc30f007e5911922913f8dc38e0bb969b534373ca0fbe85b4d872300e8b'] checksums = ['fb152fc30f007e5911922913f8dc38e0bb969b534373ca0fbe85b4d872300e8b']

3
c/CGAL/CGAL-4.12-intel-2017a.eb
View File

@ -10,7 +10,8 @@ description = """The goal of the CGAL Open Source Project is to provide easy acc
toolchain = {'name': 'intel', 'version': '2017a'} toolchain = {'name': 'intel', 'version': '2017a'}
toolchainopts = {'strict': True} toolchainopts = {'strict': True}
source_urls = ['https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-%(version)s'] source_urls = [
'https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-%(version)s']
sources = [SOURCE_TAR_XZ] sources = [SOURCE_TAR_XZ]
dependencies = [ dependencies = [

3
c/CGAL/CGAL-4.8.1-intel-2017a.eb
View File

@ -8,7 +8,8 @@ description = """The goal of the CGAL Open Source Project is to provide easy acc
toolchain = {'name': 'intel', 'version': '2017a'} toolchain = {'name': 'intel', 'version': '2017a'}
toolchainopts = {'strict': True} toolchainopts = {'strict': True}
source_urls = ['https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-%(version)s'] source_urls = [
'https://github.com/CGAL/cgal/releases/download/releases%2FCGAL-%(version)s']
sources = [SOURCE_TAR_XZ] sources = [SOURCE_TAR_XZ]
dependencies = [ dependencies = [

10
c/CLooG/CLooG-0.18.1-GCC-4.8.2.eb
View File

@ -20,8 +20,12 @@ source_urls = ['http://www.bastoul.net/cloog/pages/download/']
dependencies = [('GMP', '5.1.3')] dependencies = [('GMP', '5.1.3')]
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/cloog', 'lib/libcloog-isl.%s' % SHLIB_EXT, 'lib/libisl.%s' % SHLIB_EXT], 'files': [
'dirs': [] 'bin/cloog',
} 'lib/libcloog-isl.%s' %
SHLIB_EXT,
'lib/libisl.%s' %
SHLIB_EXT],
'dirs': []}
moduleclass = 'compiler' moduleclass = 'compiler'

3
c/CNTKCustomMKL/CNTKCustomMKL-3.0.eb
View File

@ -8,7 +8,8 @@ description = """The default CNTK math library is the Intel Math Kernel Library
toolchain = {'name': 'dummy', 'version': ''} toolchain = {'name': 'dummy', 'version': ''}
source_urls = ['http://www.microsoft.com/en-us/cognitive-toolkit/wp-content/uploads/sites/3/2017/05'] source_urls = [
'http://www.microsoft.com/en-us/cognitive-toolkit/wp-content/uploads/sites/3/2017/05']
sources = ['CNTKCustomMKL-Linux-3.tgz'] sources = ['CNTKCustomMKL-Linux-3.tgz']
sanity_check_paths = { sanity_check_paths = {

3
c/CUDA/CUDA-7.5.18.eb
View File

@ -9,7 +9,8 @@ description = """CUDA (formerly Compute Unified Device Architecture) is a parall
toolchain = {'name': 'dummy', 'version': 'dummy'} toolchain = {'name': 'dummy', 'version': 'dummy'}
source_urls = ['http://developer.download.nvidia.com/compute/cuda/%(version_major_minor)s/Prod/local_installers/'] source_urls = [
'http://developer.download.nvidia.com/compute/cuda/%(version_major_minor)s/Prod/local_installers/']
sources = ['%(namelower)s_%(version)s_linux.run'] sources = ['%(namelower)s_%(version)s_linux.run']

3
c/CUDA/CUDA-8.0.44.eb
View File

@ -9,7 +9,8 @@ description = """CUDA (formerly Compute Unified Device Architecture) is a parall
toolchain = {'name': 'dummy', 'version': ''} toolchain = {'name': 'dummy', 'version': ''}
source_urls = ['https://developer.nvidia.com/compute/cuda/%(version_major_minor)s/prod/local_installers/'] source_urls = [
'https://developer.nvidia.com/compute/cuda/%(version_major_minor)s/prod/local_installers/']
sources = ['%(namelower)s_%(version)s_linux-run'] sources = ['%(namelower)s_%(version)s_linux-run']

3
c/CUDA/CUDA-9.0.176.eb
View File

@ -9,7 +9,8 @@ description = """CUDA (formerly Compute Unified Device Architecture) is a parall
toolchain = {'name': 'dummy', 'version': 'dummy'} toolchain = {'name': 'dummy', 'version': 'dummy'}
source_urls = ['https://developer.nvidia.com/compute/cuda/%(version_major_minor)s/Prod/local_installers/'] source_urls = [
'https://developer.nvidia.com/compute/cuda/%(version_major_minor)s/Prod/local_installers/']
sources = ['cuda_%(version)s_384.81_linux-run'] sources = ['cuda_%(version)s_384.81_linux-run']
checksums = ['96863423feaa50b5c1c5e1b9ec537ef7ba77576a3986652351ae43e66bcd080c'] checksums = ['96863423feaa50b5c1c5e1b9ec537ef7ba77576a3986652351ae43e66bcd080c']

3
c/CUDA/CUDA-9.1.85.eb
View File

@ -9,7 +9,8 @@ description = """CUDA (formerly Compute Unified Device Architecture) is a parall
toolchain = {'name': 'dummy', 'version': ''} toolchain = {'name': 'dummy', 'version': ''}
source_urls = ['https://developer.nvidia.com/compute/cuda/%(version_major_minor)s/prod/local_installers/'] source_urls = [
'https://developer.nvidia.com/compute/cuda/%(version_major_minor)s/prod/local_installers/']
sources = ['cuda_9.1.85_387.26_linux'] sources = ['cuda_9.1.85_387.26_linux']

3
c/CUDA/CUDA-9.2.88.eb
View File

@ -11,7 +11,8 @@ description = """CUDA (formerly Compute Unified Device Architecture) is a parall
toolchain = {'name': 'dummy', 'version': ''} toolchain = {'name': 'dummy', 'version': ''}
source_urls = ['https://developer.nvidia.com/compute/cuda/%(version_major_minor)s/prod/local_installers/'] source_urls = [
'https://developer.nvidia.com/compute/cuda/%(version_major_minor)s/prod/local_installers/']
sources = ['cuda_9.2.88_396.26_linux'] sources = ['cuda_9.2.88_396.26_linux']

5
c/Cantera/Cantera-2.2.1-intel-2016b-Python-2.7.12.eb
View File

@ -33,7 +33,10 @@ modextrapaths = {'PYTHONPATH': ['lib/python%(pyshortver)s/site-packages']}
sanity_check_paths = { sanity_check_paths = {
'files': ['bin/mixmaster'], 'files': ['bin/mixmaster'],
'dirs': ['include/cantera', 'lib/pkgconfig', 'lib/python%(pyshortver)s/site-packages'], 'dirs': [
'include/cantera',
'lib/pkgconfig',
'lib/python%(pyshortver)s/site-packages'],
} }
sanity_check_commands = [('python', "-c 'import cantera'")] sanity_check_commands = [('python', "-c 'import cantera'")]

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