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https://code.it4i.cz/sccs/easyconfigs-it4i.git
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new file: b/Biopython/Biopython-1.73-Py-2.7.eb
new file: b/Biopython/Biopython-1.73-Py-3.6.eb new file: n/numpy/numpy-1.16.3-Py-2.7.eb modified: o/ORCA/ORCA-4.1.1-OpenMPI-2.1.5.eb
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b/Biopython/Biopython-1.73-Py-2.7.eb
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b/Biopython/Biopython-1.73-Py-2.7.eb
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# IT4Innovations 2019
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easyblock = "PythonPackage"
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name = 'Biopython'
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version = '1.73'
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homepage = 'http://www.biopython.org'
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description = """Biopython is a set of freely available tools for biological
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computation written in Python by an international team of developers. It is
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a distributed collaborative effort to develop Python libraries and
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applications which address the needs of current and future work in
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bioinformatics. """
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toolchain = {'name': 'Py', 'version': '2.7'}
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source_urls = ['http://biopython.org/DIST']
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sources = [SOURCELOWER_TAR_GZ]
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dependencies = [
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('numpy', '1.16.3'),
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]
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sanity_check_paths = {
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'files': [],
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'dirs': ['lib/python2.7/site-packages/%(namelower)s-%(version)s-py2.7.egg-info'],
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}
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sanity_check_commands = ["python -c 'import Bio.MarkovModel'"]
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options = {'modulename': 'Bio'}
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moduleclass = 'python'
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b/Biopython/Biopython-1.73-Py-3.6.eb
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b/Biopython/Biopython-1.73-Py-3.6.eb
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# IT4Innovations 2019
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easyblock = "PythonPackage"
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name = 'Biopython'
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version = '1.73'
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homepage = 'http://www.biopython.org'
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description = """Biopython is a set of freely available tools for biological
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computation written in Python by an international team of developers. It is
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a distributed collaborative effort to develop Python libraries and
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applications which address the needs of current and future work in
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bioinformatics. """
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toolchain = {'name': 'Py', 'version': '3.6'}
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source_urls = ['http://biopython.org/DIST']
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sources = [SOURCELOWER_TAR_GZ]
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dependencies = [
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('numpy', '1.16.3'),
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]
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sanity_check_paths = {
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'files': [],
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'dirs': ['lib/python3.6/site-packages/%(namelower)s-%(version)s-py3.6.egg-info'],
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}
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sanity_check_commands = ["python -c 'import Bio.MarkovModel'"]
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options = {'modulename': 'Bio'}
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moduleclass = 'python'
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31
n/numpy/numpy-1.16.3-Py-2.7.eb
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n/numpy/numpy-1.16.3-Py-2.7.eb
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# IT4Innovations 2019
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easyblock = 'PythonPackage'
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name = 'numpy'
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version = '1.16.3'
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homepage = 'http://www.numpy.org'
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description = """NumPy is the fundamental package needed for scientific computing with Python."""
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toolchain = {'name': 'Py', 'version': '2.7'}
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source_urls = ['https://github.com/numpy/numpy/releases/download/v%(version)s']
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sources = [SOURCE_TAR_GZ]
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patch = [
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'numpy-1.8.1-mkl.patch',
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'numpy-1.11.0-sse42.patch'
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]
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dependencies = [
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('mkl', '2017.4.239', '', True),
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]
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sanity_check_paths = {'files': [], 'dirs': [
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'lib/python2.7/site-packages/%(name)s-%(version)s-py2.7-linux-x86_64.egg/numpy'], }
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sanity_check_commands = [
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('python', '-c "import numpy; assert(numpy.__version__ == \'%(version)s\')"')]
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moduleclass = 'python'
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@ -17,7 +17,6 @@ toolchain = {'name': 'dummy', 'version': ''}
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# Download from https://orcaforum.kofo.mpg.de
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# Download from https://orcaforum.kofo.mpg.de
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sources = ['orca_4_1_1_linux_x86-64_openmpi215.tar.xz']
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sources = ['orca_4_1_1_linux_x86-64_openmpi215.tar.xz']
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checksums = ['30dcbf83adbb766b512fa22e800122ae']
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dependencies = [('OpenMPI', '2.1.5', '-GCC-6.3.0-2.27')]
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dependencies = [('OpenMPI', '2.1.5', '-GCC-6.3.0-2.27')]
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