From 3d5e1c427c03a0e0512d7165cad067eedb91cad1 Mon Sep 17 00:00:00 2001
From: Easy Build <easybuild@login3.smc.salomon.it4i.cz>
Date: Mon, 8 Jul 2019 12:38:07 +0200
Subject: [PATCH] 	new file:   b/Biopython/Biopython-1.73-Py-2.7.eb 
 new file:   b/Biopython/Biopython-1.73-Py-3.6.eb 	new file:  
 n/numpy/numpy-1.16.3-Py-2.7.eb 	modified:  
 o/ORCA/ORCA-4.1.1-OpenMPI-2.1.5.eb

---
 b/Biopython/Biopython-1.73-Py-2.7.eb | 32 ++++++++++++++++++++++++++++
 b/Biopython/Biopython-1.73-Py-3.6.eb | 32 ++++++++++++++++++++++++++++
 n/numpy/numpy-1.16.3-Py-2.7.eb       | 31 +++++++++++++++++++++++++++
 o/ORCA/ORCA-4.1.1-OpenMPI-2.1.5.eb   |  1 -
 4 files changed, 95 insertions(+), 1 deletion(-)
 create mode 100644 b/Biopython/Biopython-1.73-Py-2.7.eb
 create mode 100644 b/Biopython/Biopython-1.73-Py-3.6.eb
 create mode 100644 n/numpy/numpy-1.16.3-Py-2.7.eb

diff --git a/b/Biopython/Biopython-1.73-Py-2.7.eb b/b/Biopython/Biopython-1.73-Py-2.7.eb
new file mode 100644
index 00000000..9314529b
--- /dev/null
+++ b/b/Biopython/Biopython-1.73-Py-2.7.eb
@@ -0,0 +1,32 @@
+# IT4Innovations 2019
+
+easyblock = "PythonPackage"
+name = 'Biopython'
+version = '1.73'
+
+homepage = 'http://www.biopython.org'
+description = """Biopython is a set of freely available tools for biological
+ computation written in Python by an international team of developers. It is
+ a distributed collaborative effort to develop Python libraries and
+ applications which address the needs of current and future work in
+ bioinformatics. """
+
+toolchain = {'name': 'Py', 'version': '2.7'}
+
+source_urls = ['http://biopython.org/DIST']
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+    ('numpy', '1.16.3'),
+]
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['lib/python2.7/site-packages/%(namelower)s-%(version)s-py2.7.egg-info'],
+}
+
+sanity_check_commands = ["python -c 'import Bio.MarkovModel'"]
+
+options = {'modulename': 'Bio'}
+
+moduleclass = 'python'
diff --git a/b/Biopython/Biopython-1.73-Py-3.6.eb b/b/Biopython/Biopython-1.73-Py-3.6.eb
new file mode 100644
index 00000000..066a0c31
--- /dev/null
+++ b/b/Biopython/Biopython-1.73-Py-3.6.eb
@@ -0,0 +1,32 @@
+# IT4Innovations 2019
+
+easyblock = "PythonPackage"
+name = 'Biopython'
+version = '1.73'
+
+homepage = 'http://www.biopython.org'
+description = """Biopython is a set of freely available tools for biological
+ computation written in Python by an international team of developers. It is
+ a distributed collaborative effort to develop Python libraries and
+ applications which address the needs of current and future work in
+ bioinformatics. """
+
+toolchain = {'name': 'Py', 'version': '3.6'}
+
+source_urls = ['http://biopython.org/DIST']
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+    ('numpy', '1.16.3'),
+]
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['lib/python3.6/site-packages/%(namelower)s-%(version)s-py3.6.egg-info'],
+}
+
+sanity_check_commands = ["python -c 'import Bio.MarkovModel'"]
+
+options = {'modulename': 'Bio'}
+
+moduleclass = 'python'
diff --git a/n/numpy/numpy-1.16.3-Py-2.7.eb b/n/numpy/numpy-1.16.3-Py-2.7.eb
new file mode 100644
index 00000000..1e99943a
--- /dev/null
+++ b/n/numpy/numpy-1.16.3-Py-2.7.eb
@@ -0,0 +1,31 @@
+# IT4Innovations 2019
+
+easyblock = 'PythonPackage'
+
+name = 'numpy'
+version = '1.16.3'
+
+homepage = 'http://www.numpy.org'
+description = """NumPy is the fundamental package needed for scientific computing with Python."""
+
+toolchain = {'name': 'Py', 'version': '2.7'}
+
+source_urls = ['https://github.com/numpy/numpy/releases/download/v%(version)s']
+sources = [SOURCE_TAR_GZ]
+
+patch = [
+    'numpy-1.8.1-mkl.patch',
+    'numpy-1.11.0-sse42.patch'
+]
+
+dependencies = [
+    ('mkl', '2017.4.239', '', True),
+]
+
+sanity_check_paths = {'files': [], 'dirs': [
+    'lib/python2.7/site-packages/%(name)s-%(version)s-py2.7-linux-x86_64.egg/numpy'], }
+
+sanity_check_commands = [
+    ('python', '-c "import numpy; assert(numpy.__version__ == \'%(version)s\')"')]
+
+moduleclass = 'python'
diff --git a/o/ORCA/ORCA-4.1.1-OpenMPI-2.1.5.eb b/o/ORCA/ORCA-4.1.1-OpenMPI-2.1.5.eb
index b2112d72..2251841f 100644
--- a/o/ORCA/ORCA-4.1.1-OpenMPI-2.1.5.eb
+++ b/o/ORCA/ORCA-4.1.1-OpenMPI-2.1.5.eb
@@ -17,7 +17,6 @@ toolchain = {'name': 'dummy', 'version': ''}
 
 # Download from https://orcaforum.kofo.mpg.de
 sources = ['orca_4_1_1_linux_x86-64_openmpi215.tar.xz']
-checksums = ['30dcbf83adbb766b512fa22e800122ae']
 
 dependencies = [('OpenMPI', '2.1.5', '-GCC-6.3.0-2.27')]