new file: b/Biopython/Biopython-1.73-Py-2.7.eb

new file:   b/Biopython/Biopython-1.73-Py-3.6.eb
	new file:   n/numpy/numpy-1.16.3-Py-2.7.eb
	modified:   o/ORCA/ORCA-4.1.1-OpenMPI-2.1.5.eb
This commit is contained in:
Easy Build 2019-07-08 12:38:07 +02:00
parent 5e3f7f5918
commit 3d5e1c427c
4 changed files with 95 additions and 1 deletions

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@ -0,0 +1,32 @@
# IT4Innovations 2019
easyblock = "PythonPackage"
name = 'Biopython'
version = '1.73'
homepage = 'http://www.biopython.org'
description = """Biopython is a set of freely available tools for biological
computation written in Python by an international team of developers. It is
a distributed collaborative effort to develop Python libraries and
applications which address the needs of current and future work in
bioinformatics. """
toolchain = {'name': 'Py', 'version': '2.7'}
source_urls = ['http://biopython.org/DIST']
sources = [SOURCELOWER_TAR_GZ]
dependencies = [
('numpy', '1.16.3'),
]
sanity_check_paths = {
'files': [],
'dirs': ['lib/python2.7/site-packages/%(namelower)s-%(version)s-py2.7.egg-info'],
}
sanity_check_commands = ["python -c 'import Bio.MarkovModel'"]
options = {'modulename': 'Bio'}
moduleclass = 'python'

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@ -0,0 +1,32 @@
# IT4Innovations 2019
easyblock = "PythonPackage"
name = 'Biopython'
version = '1.73'
homepage = 'http://www.biopython.org'
description = """Biopython is a set of freely available tools for biological
computation written in Python by an international team of developers. It is
a distributed collaborative effort to develop Python libraries and
applications which address the needs of current and future work in
bioinformatics. """
toolchain = {'name': 'Py', 'version': '3.6'}
source_urls = ['http://biopython.org/DIST']
sources = [SOURCELOWER_TAR_GZ]
dependencies = [
('numpy', '1.16.3'),
]
sanity_check_paths = {
'files': [],
'dirs': ['lib/python3.6/site-packages/%(namelower)s-%(version)s-py3.6.egg-info'],
}
sanity_check_commands = ["python -c 'import Bio.MarkovModel'"]
options = {'modulename': 'Bio'}
moduleclass = 'python'

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@ -0,0 +1,31 @@
# IT4Innovations 2019
easyblock = 'PythonPackage'
name = 'numpy'
version = '1.16.3'
homepage = 'http://www.numpy.org'
description = """NumPy is the fundamental package needed for scientific computing with Python."""
toolchain = {'name': 'Py', 'version': '2.7'}
source_urls = ['https://github.com/numpy/numpy/releases/download/v%(version)s']
sources = [SOURCE_TAR_GZ]
patch = [
'numpy-1.8.1-mkl.patch',
'numpy-1.11.0-sse42.patch'
]
dependencies = [
('mkl', '2017.4.239', '', True),
]
sanity_check_paths = {'files': [], 'dirs': [
'lib/python2.7/site-packages/%(name)s-%(version)s-py2.7-linux-x86_64.egg/numpy'], }
sanity_check_commands = [
('python', '-c "import numpy; assert(numpy.__version__ == \'%(version)s\')"')]
moduleclass = 'python'

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@ -17,7 +17,6 @@ toolchain = {'name': 'dummy', 'version': ''}
# Download from https://orcaforum.kofo.mpg.de
sources = ['orca_4_1_1_linux_x86-64_openmpi215.tar.xz']
checksums = ['30dcbf83adbb766b512fa22e800122ae']
dependencies = [('OpenMPI', '2.1.5', '-GCC-6.3.0-2.27')]