mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-15 19:28:06 +01:00
31 lines
792 B
Plaintext
31 lines
792 B
Plaintext
easyblock = 'ConfigureMake'
|
|
|
|
name = 'RSEM'
|
|
version = '1.2.30'
|
|
|
|
homepage = 'http://deweylab.github.io/RSEM/'
|
|
description = """RNA-Seq by Expectation-Maximization"""
|
|
|
|
toolchain = {'name': 'foss', 'version': '2016a'}
|
|
|
|
source_urls = ['https://github.com/deweylab/RSEM/archive/']
|
|
sources = ['v%(version)s.tar.gz']
|
|
|
|
patches = ['RSEM-%(version)s_makefiles.patch']
|
|
|
|
skipsteps = ['configure']
|
|
installopts = "prefix=%(installdir)s"
|
|
|
|
dependencies = [
|
|
('ncurses', '6.0'),
|
|
('zlib', '1.2.8'),
|
|
]
|
|
|
|
sanity_check_paths = {
|
|
'files': ['bin/rsem-calculate-expression', 'bin/rsem-plot-model', 'bin/rsem-plot-transcript-wiggles', 'bin/rsem-bam2wig',
|
|
'bin/rsem-generate-data-matrix', 'bin/rsem-run-em', 'bin/convert-sam-for-rsem'],
|
|
'dirs': ['bin/samtools-1.3'],
|
|
}
|
|
|
|
moduleclass = 'bio'
|