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43 lines
1.5 KiB
Plaintext
43 lines
1.5 KiB
Plaintext
##
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# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
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#
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# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB
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# Authors:: George Tsouloupas <g.tsouloupas@cyi.ac.cy>, Fotis Georgatos <fotis.georgatos@uni.lu>, Kenneth Hoste (UGent)
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# License:: MIT/GPL
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# $Id$
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#
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# This work implements a part of the HPCBIOS project and is a component of the policy:
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# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
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# Modified by: Adam Huffman
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# The Francis Crick Institute
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##
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easyblock = 'Tarball'
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name = 'GATK'
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version = '3.7'
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versionsuffix = '-Java-%(javaver)s'
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homepage = 'http://www.broadinstitute.org/gatk/'
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description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute
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to analyse next-generation resequencing data. The toolkit offers a wide variety of tools,
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with a primary focus on variant discovery and genotyping as well as strong emphasis on
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data quality assurance. Its robust architecture, powerful processing engine and
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high-performance computing features make it capable of taking on projects of any size."""
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toolchain = {'name': 'dummy', 'version': 'dummy'}
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# download manually from http://www.broadinstitute.org/gatk/download
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sources = ['GenomeAnalysisTK-%(version)s.tar.bz2']
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dependencies = [('Java', '1.8.0_112')]
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modloadmsg = "To execute GATK run: java -jar $EBROOTGATK/GenomeAnalysisTK.jar\n"
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sanity_check_paths = {
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'files': ["GenomeAnalysisTK.jar"],
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'dirs': ["resources"],
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}
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moduleclass = 'bio'
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