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new file: e/ETSF_IO/ETSF_IO-1.0.4-intel-2017a.eb new file: l/LAMMPS/LAMMPS-31Mar2017-intel-2017a-REAXC.eb new file: l/libxc/libxc-3.0.0-intel-2017a.eb new file: l/libxc/libxc-4.0.1-GCC-6.3.0-2.27.eb new file: l/libxc/libxc-4.0.1-intel-2017a.eb new file: l/libxc/libxc-4.0.1.eb new file: l/libxml2/libxml2-2.7.8.eb modified: n/Netgen/Netgen-6.0-beta.eb new file: o/Octopus/Octopus-7.1-intel-2017a-mpi.eb new file: o/OpenBLAS/OpenBLAS-0.2.9-LAPACK-3.5.0.eb new file: p/PFFT/PFFT-1.0.8-alpha-intel-2017a.eb new file: p/Perl/Perl-5.26.1-intel-2017a.eb new file: s/Singularity/Singularity-2.3.2-docker-fix.eb new file: s/Singularity/Singularity-2.4.eb new file: t/Tar/Tar-1.29.eb new file: t/Togl/Togl-1.7-intel-2017a.eb
36 lines
1001 B
Plaintext
36 lines
1001 B
Plaintext
easyblock = 'ConfigureMake'
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name = 'bcl2fastq2'
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version = '2.20.0'
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versionsuffix = '-Python-%(pyver)s'
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homepage = 'https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html'
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description = """bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by
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Illumina sequencing systems to standard FASTQ file formats for downstream analysis."""
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toolchain = {'name': 'intel', 'version': '2017a'}
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source_urls = ['ftp://webdata2:webdata2@ussd-ftp.illumina.com/downloads/software/bcl2fastq/']
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sources = [{
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'filename': '%(name)s-v%(version)s-tar.zip',
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'extract_cmd': 'unzip -p %s | tar -xzvf -', # source file is a .zip that contains a .tar.gz
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}]
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start_dir = 'src'
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configopts = '--force-builddir --with-cmake=cmake '
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builddependencies = [
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('CMake', '3.9.1', '', True),
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]
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dependencies = [
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('Python', '2.7.13', '', True),
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]
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sanity_check_paths = {
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'files': ['bin/bcl2fastq'],
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'dirs': ['lib']
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}
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moduleclass = 'bio'
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