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45 lines
1.8 KiB
Plaintext
45 lines
1.8 KiB
Plaintext
easyblock = 'PackedBinary'
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name = 'Kraken'
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version = '0.10.5-beta'
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versionsuffix='-Perl-%(perlver)s'
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homepage = 'http://ccb.jhu.edu/software/kraken/'
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description = """Kraken is a system for assigning taxonomic labels to short DNA sequences,
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usually obtained through metagenomic studies. Previous attempts by other
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bioinformatics software to accomplish this task have often used sequence
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alignment or machine learning techniques that were quite slow, leading to
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the development of less sensitive but much faster abundance estimation
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programs. Kraken aims to achieve high sensitivity and high speed by
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utilizing exact alignments of k-mers and a novel classification algorithm."""
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#Part is compiled with CXX, the rest is in Perl
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toolchain = {'name': 'foss', 'version': '2016a'}
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toolchainopts = {'openmp': True}
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source_urls = ['http://ccb.jhu.edu/software/kraken/dl/']
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sources = [SOURCELOWER_TGZ]
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patches = ['Kraken_%(version)s_makefile.patch']
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dependencies = [
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('Perl', '5.22.1'),
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('Jellyfish', '1.1.11'),
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('wget', '1.17.1'),
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]
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install_cmd = 'cd %(builddir)s/%(namelower)s-%(version)s && '
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install_cmd += './install_kraken.sh %(installdir)s'
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sanity_check_paths = {
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'files': ['add_to_library.sh', 'build_kraken_db.sh', 'check_for_jellyfish.sh', 'classify', 'clean_db.sh',
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'cp_into_tempfile.pl', 'db_shrink', 'db_sort', 'download_genomic_library.sh',
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'download_taxonomy.sh', 'kraken', 'kraken-build', 'kraken-filter', 'krakenlib.pm',
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'kraken-mpa-report', 'kraken-report', 'kraken-translate', 'make_seqid_to_taxid_map',
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'read_merger.pl', 'report_gi_numbers.pl', 'set_lcas', 'shrink_db.sh',
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'standard_installation.sh', 'upgrade_db.sh', 'verify_gi_numbers.pl'],
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'dirs': [],
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}
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moduleclass = 'bio'
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