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39 lines
1.1 KiB
Plaintext
39 lines
1.1 KiB
Plaintext
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
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# Author: Pablo Escobar Lopez
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# Swiss Institute of Bioinformatics
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# Biozentrum - University of Basel
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name = 'Trinity'
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version = '2.2.0'
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homepage = 'http://trinityrnaseq.github.io/'
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description = """Trinity represents a novel method for the efficient and robust de novo reconstruction
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of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm,
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Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads."""
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toolchain = {'name': 'foss', 'version': '2016a'}
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source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/']
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sources = ['v%(version)s.tar.gz']
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patches = [
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'chrysalis_commandline_noconsts_2012-10-05.patch',
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'Trinity-2.2.0_jellyfish-Makefile.patch',
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]
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builddependencies = [
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('Autotools', '20150215'),
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]
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dependencies = [
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('Java', '1.8.0_92', '', True),
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('ant', '1.9.7', '-Java-%(javaver)s', True),
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('Bowtie', '1.1.2'),
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('Bowtie2', '2.2.8'),
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('ncurses', '6.0',),
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('zlib', '1.2.8'),
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('Perl', '5.22.1'),
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]
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moduleclass = 'bio'
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