mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-16 03:38:05 +01:00
33 lines
897 B
Plaintext
33 lines
897 B
Plaintext
easyblock = 'MakeCp'
|
|
|
|
name = 'psmc'
|
|
version = '0.6.5'
|
|
|
|
homepage = 'https://github.com/lh3/psmc'
|
|
description = """This software package infers population size history from a diploid sequence
|
|
using the Pairwise Sequentially Markovian Coalescent (PSMC) model."""
|
|
|
|
toolchain = {'name': 'foss', 'version': '2016a'}
|
|
|
|
source_urls = ['https://github.com/lh3/psmc/archive/']
|
|
sources = ['%(version)s.tar.gz']
|
|
|
|
buildopts = '&& cd utils && make'
|
|
|
|
utils = [
|
|
'avg.pl', 'calD', 'cntcpg', 'ctime_plot.pl', 'dec2ctime.pl', 'decode2bed.pl', 'fq2psmcfa', 'history2ms.pl',
|
|
'ms2psmcfa.pl', 'mutDiff', 'pcnt_bezier.lua', 'psmc2history.pl', 'psmc_plot.pl', 'psmc_trunc.pl', 'splitfa',
|
|
]
|
|
|
|
files_to_copy = [
|
|
(['psmc'], 'bin'),
|
|
(['utils/%s' % util for util in utils], 'bin')
|
|
]
|
|
|
|
sanity_check_paths = {
|
|
'files': ['bin/psmc'] + ['bin/%s' % util for util in utils],
|
|
'dirs': [],
|
|
}
|
|
|
|
moduleclass = 'bio'
|