mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-14 02:41:22 +01:00
506f8286d9
new file: b/Boost/Boost-1.68.0-intel-2017a.eb new file: b/Boost/Boost-1.68.0-intel-2017c.eb new file: "b/bcl2fastq2/\\" new file: b/bcl2fastq2/bcl2fastq2-2.20.0-intel-2017a-Py-2.7.eb new file: b/bcl2fastq2/bcl2fastq2-2.20.0-intel-2017a-Py-3.6.eb modified: d/DIRAC/DIRAC-18.0-intel-2017c-Py-2.7-test.eb new file: f/FastQC/FastQC-0.11.3.eb new file: f/FastQC/FastQC-0.11.8.eb new file: f/fontconfig/fontconfig-2.13.0-libpng-1.6.34.eb new file: g/GATK/GATK-4.1.2.0-Java-1.8.0_202.eb new file: g/GDAL/GDAL-2.4.0-intel-2017a-Py-3.6.eb new file: g/GEOS/GEOS-3.7.2-Py-3.6.eb new file: g/gnuplot/gnuplot-5.2.7-GCC-6.3.0-2.27.eb modified: h/HTSlib/HTSlib-1.6-intel-2017a.eb new file: l/libMesh/libMesh-1.4.1-intel-2017a.eb new file: l/libMesh/libMesh-1.4.1-intel-2017c.eb new file: m/MUMPS/MUMPS-5.2.0-intel-2017c-parmetis.eb modified: p/Python/Python-3.6.8-GCC-6.3.0-2.27-base.eb new file: r/R/R-3.5.3-intel-2017a-Py-3.6.eb modified: s/SAMtools/SAMtools-1.6-intel-2017a.eb new file: s/SWIG/SWIG-3.0.12-Py-3.6.eb deleted: b/bcl2fastq2/bcl2fastq2-2.20.0-intel-2017a-Python-2.7.13.eb
51 lines
1.2 KiB
Plaintext
51 lines
1.2 KiB
Plaintext
# IT4Innovations 2019
|
|
|
|
easyblock = 'ConfigureMake'
|
|
|
|
name = 'BCFtools'
|
|
version = '1.6'
|
|
|
|
homepage = 'http://www.htslib.org/'
|
|
description = """Samtools is a suite of programs for interacting with high-throughput sequencing data.
|
|
BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants"""
|
|
|
|
toolchain = {'name': 'intel', 'version': '2017a'}
|
|
toolchainopts = {'optarch': True, 'pic': True}
|
|
|
|
sources = [SOURCELOWER_TAR_BZ2]
|
|
source_urls = [
|
|
'https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
|
|
|
|
#patches = ['BCFtools-%(version)s_extHTSlib_Makefile.patch']
|
|
|
|
dependencies = [
|
|
('zlib', '1.2.11', '', True),
|
|
('HTSlib', '1.6'),
|
|
('GSL', '2.5'),
|
|
('XZ', '5.2.4', '', True),
|
|
]
|
|
|
|
parallel = 1
|
|
|
|
skipsteps = ['configure']
|
|
|
|
buildopts = 'CC="$CC" CFLAGS="$CFLAGS" USE_GSL=1'
|
|
installopts = ' prefix=%(installdir)s'
|
|
|
|
postinstallcmds = [
|
|
'mkdir -p %(installdir)s/lib/plugins',
|
|
'cp -a plugins/*.so %(installdir)s/lib/plugins/.',
|
|
]
|
|
|
|
sanity_check_paths = {
|
|
'files': [
|
|
'bin/%s' %
|
|
x for x in [
|
|
'bcftools',
|
|
'plot-vcfstats',
|
|
'vcfutils.pl']],
|
|
'dirs': ['lib/plugins'],
|
|
}
|
|
|
|
moduleclass = 'bio'
|