easyconfigs-it4i/archive/k/Kraken/Kraken-0.10.5-beta-foss-2016a-Perl-5.22.1.eb
easybuild 40b461ca6f fix
2019-11-06 13:38:09 +01:00

65 lines
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easyblock = 'PackedBinary'
name = 'Kraken'
version = '0.10.5-beta'
versionsuffix = '-Perl-%(perlver)s'
homepage = 'http://ccb.jhu.edu/software/kraken/'
description = """Kraken is a system for assigning taxonomic labels to short DNA sequences,
usually obtained through metagenomic studies. Previous attempts by other
bioinformatics software to aclocal_complish this task have often used sequence
alignment or machine learning techniques that were quite slow, leading to
the development of less sensitive but much faster abundance estimation
programs. Kraken aims to achieve high sensitivity and high speed by
utilizing exact alignments of k-mers and a novel classification algorithm."""
# Part is local_compiled with CXX, the rest is in Perl
toolchain = {'name': 'foss', 'version': '2016a'}
toolchainopts = {'openmp': True}
source_urls = ['http://ccb.jhu.edu/software/kraken/dl/']
sources = [SOURCELOWER_TGZ]
patches = ['Kraken_%(version)s_makefile.patch']
dependencies = [
('Perl', '5.22.1'),
('Jellyfish', '1.1.11'),
('wget', '1.17.1'),
]
install_cmd = 'cd %(builddir)s/%(namelower)s-%(version)s && '
install_cmd += './install_kraken.sh %(installdir)s'
sanity_check_paths = {
'files': [
'add_to_library.sh',
'build_kraken_db.sh',
'check_for_jellyfish.sh',
'classify',
'clean_db.sh',
'cp_into_tempfile.pl',
'db_shrink',
'db_sort',
'download_genomic_library.sh',
'download_taxonomy.sh',
'kraken',
'kraken-build',
'kraken-filter',
'krakenlib.pm',
'kraken-mpa-report',
'kraken-report',
'kraken-translate',
'make_seqid_to_taxid_map',
'read_merger.pl',
'report_gi_numbers.pl',
'set_lcas',
'shrink_db.sh',
'standard_installation.sh',
'upgrade_db.sh',
'verify_gi_numbers.pl'],
'dirs': [],
}
moduleclass = 'bio'