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36 lines
1.2 KiB
Plaintext
36 lines
1.2 KiB
Plaintext
easyblock = 'ConfigureMake'
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name = 'Stacks'
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version = '1.42'
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homepage = 'http://creskolab.uoregon.edu/stacks/'
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description = """Stacks is a software pipeline for building loci from short-read sequences, such as those generated on
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the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose
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of building genetic maps and conducting population genomics and phylogeography.
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"""
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toolchain = {'name': 'foss', 'version': '2016a'}
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source_urls = ['http://catchenlab.life.illinois.edu/stacks/source/']
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sources = [SOURCELOWER_TAR_GZ]
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dependencies = [
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('zlib', '1.2.8'),
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('SAMtools', '1.3.1'),
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('sparsehash', '2.0.2'),
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]
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sanity_check_paths = {
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'files': [
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'bin/%s' % binfile for binfile in [
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'clone_filter', 'denovo_map.pl', 'exec_velvet.pl', 'genotypes', 'index_radtags.pl', 'load_radtags.pl',
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'populations', 'process_shortreads', 'ref_map.pl', 'sstacks', 'ustacks', 'cstacks', 'estacks',
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'export_sql.pl', 'hstacks', 'kmer_filter', 'load_sequences.pl', 'process_radtags', 'pstacks',
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'sort_read_pairs.pl', 'stacks_export_notify.pl',
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]
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],
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'dirs': [],
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}
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moduleclass = 'bio'
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