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49 lines
1.3 KiB
Plaintext
49 lines
1.3 KiB
Plaintext
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
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# Author: Pablo Escobar Lopez
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# sciCORE - University of Basel
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# SIB Swiss Institute of Bioinformatics
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easyblock = 'Bundle'
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name = 'Pysam'
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version = '0.9.0'
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versionsuffix = '-Python-%(local_pyver)s'
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homepage = 'https://github.com/pysam-developers/pysam'
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description = """Pysam is a python module for reading and manipulating Samfiles.
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It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix."""
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toolchain = {'name': 'goolf', 'version': '1.7.20'}
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parallel = 1
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dependencies = [
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('Python', '2.7.11'),
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('ncurses', '5.9'),
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('zlib', '1.2.8'),
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('cURL', '7.44.0'),
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]
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# this is a bundle of Python packages
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exts_defaultclass = 'PythonPackage'
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exts_filter = ("python -c 'import %(ext_name)s'", '')
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exts_list = [
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('Cython', '0.23.4', {
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'source_urls': ['http://cython.org/release/'],
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}),
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('pysam', version, {
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'source_tmpl': 'v%(version)s.tar.gz',
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'source_urls': ['https://github.com/pysam-developers/pysam/archive/'],
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}),
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]
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modextrapaths = {
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'PYTHONPATH': ['lib/python%(local_pyshortver)s/site-packages'],
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}
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sanity_check_paths = {'files': [], 'dirs': [
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'lib/python%(local_pyshortver)s/site-packages/pysam-%(version)s-py%(local_pyshortver)s-linux-x86_64.egg'], }
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moduleclass = 'bio'
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