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new file: g/GROMACS/GROMACS-2023.1-foss-2022a-CUDA-12.0.0.eb new file: u/UCX-CUDA/UCX-CUDA-1.12.1-GCCcore-11.3.0-CUDA-12.0.0.eb
79 lines
2.3 KiB
Plaintext
79 lines
2.3 KiB
Plaintext
# IT4Innovations
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# LK 2023
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name = 'GROMACS'
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version = '2023.1'
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versionsuffix = '-CUDA-%(cudaver)s'
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homepage = 'https://www.gromacs.org'
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description = """
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GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the
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Newtonian equations of motion for systems with hundreds to millions of
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particles.
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This is a GPU enabled build, containing both MPI and threadMPI binaries.
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It also contains the gmxapi extension for the single precision MPI build.
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"""
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toolchain = {'name': 'foss', 'version': '2022a'}
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toolchainopts = {'openmp': True, 'usempi': True}
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source_urls = [
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'https://ftp.gromacs.org/pub/gromacs/',
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'ftp://ftp.gromacs.org/pub/gromacs/',
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]
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sources = [SOURCELOWER_TAR_GZ]
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patches = [
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'GROMACS-%(version)s_fix_env_for_subprocesses.patch',
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'GROMACS-%(version)s_set_omp_num_threads_env_for_ntomp_tests.patch',
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'GROMACS-%(version)s_fix_tests_for_gmx_thread_mpi.patch',
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]
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checksums = [
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{'gromacs-2023.1.tar.gz': 'eef2bb4a6cb6314cf9da47f26df2a0d27af4bf7b3099723d43601073ab0a42f4'},
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{'GROMACS-2023.1_fix_env_for_subprocesses.patch':
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'39ba066c936cddc190bab13c47d6af1575f5d7737d5c0719fe46211a13cd3539'},
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{'GROMACS-2023.1_set_omp_num_threads_env_for_ntomp_tests.patch':
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'7f41bda16c9c2837624265dda4be252f655d1288ddc4486b1a2422af30d5d199'},
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{'GROMACS-2023.1_fix_tests_for_gmx_thread_mpi.patch':
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'6df844bb3bbc51180446a3595c61a4ef195e5f975533a04cef76841aa763aec1'},
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]
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builddependencies = [
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('CMake', '3.24.3'),
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('scikit-build', '0.15.0'),
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]
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dependencies = [
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('CUDA', '12.0.0', '', SYSTEM),
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('UCX-CUDA', '1.12.1', versionsuffix),
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('Python', '3.10.4'),
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('SciPy-bundle', '2022.05'),
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('networkx', '2.8.4'),
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]
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exts_defaultclass = 'PythonPackage'
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exts_default_options = {
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'source_urls': [PYPI_SOURCE],
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'use_pip': True,
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'download_dep_fail': True,
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'sanity_pip_check': True,
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}
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exts_list = [
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('gmxapi', '0.4.0', {
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'preinstallopts': 'export CMAKE_ARGS="-Dgmxapi_ROOT=%(installdir)s ' +
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'-C %(installdir)s/share/cmake/gromacs_mpi/gromacs-hints_mpi.cmake" && ',
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'source_tmpl': 'gromacs-2023.1.tar.gz',
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'start_dir': 'python_packaging/gmxapi',
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'checksums': ['eef2bb4a6cb6314cf9da47f26df2a0d27af4bf7b3099723d43601073ab0a42f4'],
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}),
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]
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modextrapaths = {
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'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages',
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}
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moduleclass = 'bio'
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