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new file: b/BWA/BWA-0.7.17-intel-2017a.eb new file: c/Clang/Clang-3.8.1-GCC-6.3.0-2.27.eb new file: d/DMTCP/DMTCP-2.5.2.eb new file: d/DMTCP/DMTCP-3.0.eb new file: f/FFTW/FFTW-3.3.6-foss-2017a.eb new file: h/HTSlib/HTSlib-1.6-intel-2017a.eb new file: l/libsndfile/libsndfile-1.0.28.eb new file: m/MPC/MPC-1.0.2.eb new file: m/MPFR/MPFR-3.1.5.eb new file: m/MPICH/MPICH-3.2.1-GCC-6.3.0-2.27.eb new file: m/Mesa/Mesa-17.2.6-foss-2017a.eb new file: n/NLopt/NLopt-2.4.2.eb new file: n/nettle/nettle-3.3-foss-2017a.eb new file: o/Octave/Octave-4.2.1-intel-2017a-mic.eb new file: p/PAPI/PAPI-5.5.1.eb new file: p/PROJ/PROJ-4.9.3-foss-2017a.eb new file: r/R/R-3.4.2-intel-2017a.eb new file: r/R/R-3.4.3-foss-2017a.eb new file: s/SAMtools/SAMtools-1.6-intel-2017a.eb new file: s/Singularity/Singularity-2.4.1.eb modified: v/VASP/VASP-5.4.1-24Jun15-intel-2015b.eb modified: v/VASP/VASP-5.4.1-24Jun15-intel-2017.00.eb modified: v/VASP/VASP-5.4.1-24Jun15-intel-2017a.eb modified: v/VASP/VASP-5.4.4-intel-2015b-mkl=sequential.eb modified: v/VASP/VASP-5.4.4-intel-2016a-CUDA-8.0.44-mkl=sequential.eb modified: v/VASP/VASP-5.4.4-intel-2017a-03.eb modified: v/VASP/VASP-5.4.4-intel-2017a-mkl=cluster.eb new file: v/VASP/VASP-5.4.4-intel-2017a-mkl=paralel-test.eb modified: v/VASP/VASP-5.4.4-intel-2017a-mkl=paralel.eb modified: v/VASP/VASP-5.4.4-intel-2017a-mkl=sequential.eb modified: v/VASP/VASP-5.4.4-intel-2017a.eb modified: v/VASP/VASP-5.4.4-intel-2017b-mkl=cluster.eb
43 lines
1.1 KiB
Plaintext
43 lines
1.1 KiB
Plaintext
easyblock = 'ConfigureMake'
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name = 'BCFtools'
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version = '1.6'
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homepage = 'http://www.htslib.org/'
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description = """Samtools is a suite of programs for interacting with high-throughput sequencing data.
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BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants"""
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toolchain = {'name': 'intel', 'version': '2017a'}
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toolchainopts = {'optarch': True, 'pic': True}
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sources = [SOURCELOWER_TAR_BZ2]
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source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
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#patches = ['BCFtools-%(version)s_extHTSlib_Makefile.patch']
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dependencies = [
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('zlib', '1.2.11', '', True),
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('HTSlib', '1.6'),
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('GSL', '2.3'),
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('XZ', '5.2.3', '', True),
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]
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parallel = 1
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skipsteps = ['configure']
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buildopts = 'CC="$CC" CFLAGS="$CFLAGS" USE_GSL=1'
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installopts = ' prefix=%(installdir)s'
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postinstallcmds = [
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'mkdir -p %(installdir)s/lib/plugins',
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'cp -a plugins/*.so %(installdir)s/lib/plugins/.',
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]
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sanity_check_paths = {
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'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']],
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'dirs': ['lib/plugins'],
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}
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moduleclass = 'bio'
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