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35 lines
837 B
Plaintext
35 lines
837 B
Plaintext
easyblock = 'MakeCp'
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name = 'BBMap'
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version = '36.62'
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versionsuffix = '-Java-%(javaver)s'
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homepage = 'https://sourceforge.net/projects/bbmap/'
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description = """BBMap short read aligner, and other bioinformatic tools."""
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toolchain = {'name': 'intel', 'version': '2016b'}
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source_urls = [SOURCEFORGE_SOURCE]
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sources = ['%(name)s_%(version)s.tar.gz']
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dependencies = [('Java', '1.8.0_112', '', True)]
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prebuildopts = 'cd jni && '
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local_suff = {'Darwin': 'osx', 'Linux': 'linux'}[OS_TYPE]
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buildopts = "-f makefile.%s" % local_suff
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files_to_copy = ['*']
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sanity_check_paths = {
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'files': ['bbmap.sh'],
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'dirs': []
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}
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modextrapaths = {'PATH': ''}
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modloadmsg = "For improved speed, add 'usejni=t' to the command line of %(name)s tools which support the use of the"
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modloadmsg += " local_compiled jni C code.\n"
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moduleclass = 'bio'
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