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new file: b/Boost/Boost-1.68.0-intel-2017a.eb new file: b/Boost/Boost-1.68.0-intel-2017c.eb new file: "b/bcl2fastq2/\\" new file: b/bcl2fastq2/bcl2fastq2-2.20.0-intel-2017a-Py-2.7.eb new file: b/bcl2fastq2/bcl2fastq2-2.20.0-intel-2017a-Py-3.6.eb modified: d/DIRAC/DIRAC-18.0-intel-2017c-Py-2.7-test.eb new file: f/FastQC/FastQC-0.11.3.eb new file: f/FastQC/FastQC-0.11.8.eb new file: f/fontconfig/fontconfig-2.13.0-libpng-1.6.34.eb new file: g/GATK/GATK-4.1.2.0-Java-1.8.0_202.eb new file: g/GDAL/GDAL-2.4.0-intel-2017a-Py-3.6.eb new file: g/GEOS/GEOS-3.7.2-Py-3.6.eb new file: g/gnuplot/gnuplot-5.2.7-GCC-6.3.0-2.27.eb modified: h/HTSlib/HTSlib-1.6-intel-2017a.eb new file: l/libMesh/libMesh-1.4.1-intel-2017a.eb new file: l/libMesh/libMesh-1.4.1-intel-2017c.eb new file: m/MUMPS/MUMPS-5.2.0-intel-2017c-parmetis.eb modified: p/Python/Python-3.6.8-GCC-6.3.0-2.27-base.eb new file: r/R/R-3.5.3-intel-2017a-Py-3.6.eb modified: s/SAMtools/SAMtools-1.6-intel-2017a.eb new file: s/SWIG/SWIG-3.0.12-Py-3.6.eb deleted: b/bcl2fastq2/bcl2fastq2-2.20.0-intel-2017a-Python-2.7.13.eb
31 lines
1.1 KiB
Plaintext
31 lines
1.1 KiB
Plaintext
# IT4Innovations 2019
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easyblock = 'PackedBinary'
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name = 'FastQC'
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version = '0.11.3'
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homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/fastqc/'
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description = """FastQC is a quality control application for high throughput sequence data.
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It reads in sequence data in a variety of formats and can either provide an interactive
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application to review the results of several different QC checks, or create an HTML based
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report which can be integrated into a pipeline."""
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toolchain = {'name': 'dummy', 'version': ''}
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source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s/']
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sources = ['%(namelower)s_v%(version)s.zip']
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dependencies = [('Java', '1.7.0_79')]
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install_cmd = "cp -a FastQC/* %(installdir)s && chmod +x %(installdir)s/fastqc"
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sanity_check_paths = {
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'files': ["fastqc", "fastqc_icon.ico", "INSTALL.txt", "jbzip2-0.9.jar", "LICENSE.txt",
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"README.txt", "RELEASE_NOTES.txt", "run_fastqc.bat", "sam-1.103.jar"],
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'dirs': ["Configuration", "Help", "Templates", "uk"],
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}
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# How to create working alias?
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moduleclass = 'bio'
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