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42 lines
1.3 KiB
Plaintext
42 lines
1.3 KiB
Plaintext
# authors: Kenneth Hoste (Ghent University), George Tsouloupas <g.tsouloupas@cyi.ac.cy>, Fotis Georgatos <fotis@cern.ch>
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#
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# This work implements a part of the HPCBIOS project and is a component of the policy:
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# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
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easyblock = 'ConfigureMake'
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name = 'EMBOSS'
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version = '6.5.7'
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homepage = 'http://emboss.sourceforge.net/'
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description = """EMBOSS is 'The European Molecular Biology Open Software Suite'.
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EMBOSS is a free Open Source software analysis package specially developed for
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the needs of the molecular biology (e.g. EMBnet) user community."""
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toolchain = {'name': 'ictce', 'version': '5.3.0'}
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source_urls = ['ftp://emboss.open-bio.org/pub/EMBOSS/']
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sources = [SOURCE_TAR_GZ]
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patches = ['EMBOSS_disable-embossupdate.patch']
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dependencies = [
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('libharu', '2.2.0'),
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('Java', '1.7.0_10', '', True),
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]
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configopts = " --with-hpdf=$EBROOTLIBHARU "
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# jemboss.jar does not build in a parallel build
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parallel = 1
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sanity_check_paths = {
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'files': ['bin/%s' % x for x in ['seqret', 'aligncopy', 'profit', 'prophet']] +
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['lib/lib%s.a' % x for x in ['acd', 'ajax', 'ajaxdb', 'ajaxg', 'eexpat', 'ensembl',
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'epcre', 'eplplot', 'ezlib', 'nucleus']] +
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['share/EMBOSS/jemboss/lib/jemboss.jar'],
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'dirs': [],
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}
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moduleclass = 'bio'
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