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46 lines
947 B
Plaintext
46 lines
947 B
Plaintext
easyblock = 'MakeCp'
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name = 'psmc'
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version = '0.6.5'
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homepage = 'https://github.com/lh3/psmc'
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description = """This software package infers population size history from a diploid sequence
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using the Pairwise Sequentially Markovian Coalescent (PSMC) model."""
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toolchain = {'name': 'foss', 'version': '2016a'}
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source_urls = ['https://github.com/lh3/psmc/archive/']
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sources = ['%(version)s.tar.gz']
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buildopts = '&& cd utils && make'
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utils = [
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'avg.pl',
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'calD',
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'cntcpg',
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'ctime_plot.pl',
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'dec2ctime.pl',
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'decode2bed.pl',
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'fq2psmcfa',
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'history2ms.pl',
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'ms2psmcfa.pl',
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'mutDiff',
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'pcnt_bezier.lua',
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'psmc2history.pl',
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'psmc_plot.pl',
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'psmc_trunc.pl',
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'splitfa',
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]
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files_to_copy = [
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(['psmc'], 'bin'),
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(['utils/%s' % util for util in utils], 'bin')
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]
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sanity_check_paths = {
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'files': ['bin/psmc'] + ['bin/%s' % util for util in utils],
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'dirs': [],
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}
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moduleclass = 'bio'
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