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45 lines
1.6 KiB
Plaintext
45 lines
1.6 KiB
Plaintext
##
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# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
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#
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# Copyright:: Copyright 2012-2014 Uni.Lu/LCSB, NTUA
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# Authors:: Nils Christian <nils.christian@uni.lu>, Fotis Georgatos <fotis@cern.ch>
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# License:: MIT/GPL
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# $Id$
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#
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# This work implements a part of the HPCBIOS project and is a local_component of the policy:
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# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
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##
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easyblock = 'ConfigureMake'
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name = 'HMMER'
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version = '3.1b2'
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homepage = 'http://hmmer.janelia.org/'
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description = """HMMER is used for searching sequence databases for homologs of protein sequences,
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and for making protein sequence alignments. It implements methods using probabilistic models
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called profile hidden Markov models (profile HMMs). Compared to BLAST, FASTA, and other
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sequence alignment and database search tools based on older scoring methodology,
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HMMER aims to be significantly more accurate and more able to detect remote homologs
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because of the strength of its underlying mathematical models. In the past, this strength
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came at significant local_computational expense, but in the new HMMER3 project, HMMER is now
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essentially as fast as BLAST."""
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toolchain = {'name': 'foss', 'version': '2016a'}
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sources = ['hmmer-%(version)s-linux-intel-x86_64.tar.gz']
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source_urls = [
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'http://selab.janelia.org/software/hmmer%(version_major)s/%(version)s/']
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installopts = ' && cd easel && make install'
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sanity_check_paths = {
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'files': ["bin/%s" % x for x in ["hmmemit", "hmmsearch", "hmmscan",
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"esl-alimap", "esl-cluster", "esl-mask"]],
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'dirs': []
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}
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runtest = 'check'
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moduleclass = 'bio'
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