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53 lines
1.4 KiB
Plaintext
53 lines
1.4 KiB
Plaintext
easyblock = 'ConfigureMake'
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name = 'Stacks'
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version = '1.42'
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homepage = 'http://creskolab.uoregon.edu/stacks/'
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description = """Stacks is a software pipeline for building loci from short-read sequences, such as those generated on
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the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose
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of building genetic maps and conducting population genomics and phylogeography.
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"""
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toolchain = {'name': 'foss', 'version': '2016a'}
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source_urls = ['http://catchenlab.life.illinois.edu/stacks/source/']
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sources = [SOURCELOWER_TAR_GZ]
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dependencies = [
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('zlib', '1.2.8'),
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('SAMtools', '1.3.1'),
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('sparsehash', '2.0.2'),
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]
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sanity_check_paths = {
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'files': [
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'bin/%s' %
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binfile for binfile in [
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'clone_filter',
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'denovo_map.pl',
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'exec_velvet.pl',
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'genotypes',
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'index_radtags.pl',
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'load_radtags.pl',
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'populations',
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'process_shortreads',
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'ref_map.pl',
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'sstacks',
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'ustacks',
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'cstacks',
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'estacks',
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'export_sql.pl',
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'hstacks',
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'kmer_filter',
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'load_sequences.pl',
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'process_radtags',
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'pstacks',
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'sort_read_pairs.pl',
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'stacks_export_notify.pl',
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]],
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'dirs': [],
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}
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moduleclass = 'bio'
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