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52 lines
1.3 KiB
Plaintext
52 lines
1.3 KiB
Plaintext
easyblock = 'MakeCp'
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name = 'ea-utils'
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version = '27a4809'
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homepage = 'https://code.google.com/p/ea-utils/'
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description = """Command-line tools for processing biological sequencing data.
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Barcode demultiplexing, adapter trimming, etc.
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Primarily written to support an Illumina based pipeline -
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but should work with any FASTQs."""
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toolchain = {'name': 'foss', 'version': '2016b'}
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toolchainopts = {'optarch': True, 'pic': True}
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source_urls = ['https://github.com/ExpressionAnalysis/%(name)s/tarball/master']
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sources = [SOURCE_TGZ]
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checksums = ['45eef4b040f83abe2c9f51d4a7d18271']
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start_dir = 'clipper'
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prebuildopts = "sed -i 's/$(CFLAGS)/$(CFLAGS) $(LDFLAGS) -I./' Makefile && PREFIX=%(installdir)s "
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buildopts = 'fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall'
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builddependencies = [
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('Perl', '5.22.1'),
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]
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dependencies = [
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('GSL', '2.1'),
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]
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files_to_copy = [([
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'fastq-mcf', 'fastq-multx', 'fastq-join', 'fastq-stats', 'fastq-clipper',
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'sam-stats', 'varcall', 'randomFQ', 'alc', 'determine-phred'], 'bin'
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)]
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sanity_check_paths = {
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'files': [
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'bin/fastq-mcf',
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'bin/fastq-multx',
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'bin/fastq-join',
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'bin/fastq-stats',
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'bin/fastq-clipper',
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'bin/sam-stats',
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'bin/varcall'],
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'dirs': []}
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moduleclass = 'bio'
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