mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-19 05:00:50 +01:00

# new file: _not_installed/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb # new file: _not_installed/a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb # new file: _not_installed/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb # new file: _not_installed/a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb # new file: _not_installed/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb # new file: _not_installed/a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb # new file: _not_installed/a/arpack-ng/arpack-ng-3.3.0-GCC-4.9.3.eb # new file: _not_installed/b/beagle-lib/beagle-lib-2.1.2-foss-2016a.eb # new file: _not_installed/b/beagle-lib/beagle-lib-2.1.2-goolf-1.7.20.eb # new file: _not_installed/b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb # new file: _not_installed/b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb # new file: _not_installed/b/beagle-lib/beagle-lib-20141202-intel-2015a.eb # new file: _not_installed/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb # new file: _not_installed/c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb # new file: _not_installed/d/DBD-mysql/DBD-mysql-4.032-intel-2016a-Perl-5.22.2.eb # new file: _not_installed/d/DBD-mysql/DBD-mysql-4.033-intel-2016b-Perl-5.24.0.eb # new file: _not_installed/d/DFT-D3/DFT-D3-3.1.1-intel-2015a.eb # new file: _not_installed/e/ea-utils/ea-utils-27a4809-foss-2016a.eb # new file: _not_installed/e/ea-utils/ea-utils-27a4809-foss-2016b.eb # new file: _not_installed/g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb # new file: _not_installed/g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb # new file: _not_installed/g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb # new file: _not_installed/g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb # new file: _not_installed/g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb # new file: _not_installed/g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb # new file: _not_installed/g/git-lfs/git-lfs-1.1.1.eb # new file: _not_installed/i/I-TASSER/I-TASSER-4.0.eb # new file: _not_installed/i/I-TASSER/I-TASSER-4.2.eb # new file: _not_installed/m/MIGRATE-N/MIGRATE-N-4.2.8-foss-2016a.eb # new file: _not_installed/m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb # new file: _not_installed/m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb # new file: _not_installed/n/netCDF-Fortran/netCDF-Fortran-4.2-ictce-6.1.5.eb # new file: _not_installed/p/PARI-GP/PARI-GP-2.7.6-foss-2016a.eb # new file: _not_installed/p/PhyloBayes-MPI/PhyloBayes-MPI-20161021-intel-2017.00.eb # new file: _not_installed/p/Postgres-XL/Postgres-XL-9.5r1-intel-2016a-Python-2.7.11.eb # new file: _not_installed/p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb # new file: _not_installed/p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb # new file: _not_installed/p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb # new file: _not_installed/p/pkg-config/pkg-config-0.27.1-intel-2015a.eb # new file: _not_installed/p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb # new file: _not_installed/p/pkg-config/pkg-config-0.28-GCC-4.9.2.eb # new file: _not_installed/p/pkg-config/pkg-config-0.28-GNU-4.9.3-2.25.eb # new file: _not_installed/p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb # new file: _not_installed/p/pkg-config/pkg-config-0.28-intel-2015a.eb # new file: _not_installed/p/pkg-config/pkg-config-0.29-gimkl-2.11.5.eb # new file: _not_installed/p/pkg-config/pkg-config-0.29-intel-2015a.eb # new file: _not_installed/p/pkg-config/pkg-config-0.29-intel-2015b.eb # new file: _not_installed/p/prompt-toolkit/prompt-toolkit-1.0.3-foss-2016a-Python-2.7.11.eb # new file: _not_installed/p/prompt-toolkit/prompt-toolkit-1.0.3-foss-2016a-Python-3.5.1.eb # new file: _not_installed/p/prompt-toolkit/prompt-toolkit-1.0.6-foss-2016b-Python-2.7.12.eb # new file: _not_installed/p/prompt-toolkit/prompt-toolkit-1.0.6-intel-2016b-Python-2.7.12.eb # new file: _not_installed/p/prompt-toolkit/prompt-toolkit-1.0.6-intel-2016b-Python-3.5.2.eb # new file: _not_installed/p/protobuf-python/protobuf-python-3.0.2-foss-2016a-Python-2.7.11.eb # new file: _not_installed/p/protobuf-python/protobuf-python-3.0.2-foss-2016a-Python-3.5.1.eb # new file: _not_installed/p/protobuf-python/protobuf-python-3.2.0-intel-2016b-Python-2.7.12.eb # new file: _not_installed/p/protobuf-python/protobuf-python-3.2.0-intel-2016b-Python-3.5.2.eb # new file: _not_installed/p/python-dateutil/python-dateutil-2.1-goolf-1.4.10-Python-2.7.3.eb # new file: _not_installed/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.2-foss-2016a-R-3.2.3.eb # new file: _not_installed/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.2-intel-2016a-R-3.2.3.eb # new file: _not_installed/s/S-Lang/S-Lang-2.3.0-GCC-4.9.2.eb # new file: _not_installed/s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb # new file: _not_installed/s/Saxon-HE/Saxon-HE-9.7.0.4-Java-1.7.0_79.eb # new file: _not_installed/u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb # new file: _not_installed/u/util-linux/util-linux-2.26.1-intel-2015b.eb # new file: _not_installed/x/xcb-util-image/xcb-util-image-0.4.0-foss-2016a.eb # new file: _not_installed/x/xcb-util-image/xcb-util-image-0.4.0-intel-2015b.eb # new file: _not_installed/x/xcb-util-image/xcb-util-image-0.4.0-intel-2016a.eb # new file: _not_installed/x/xcb-util-keysyms/xcb-util-keysyms-0.4.0-foss-2016a.eb # new file: _not_installed/x/xcb-util-keysyms/xcb-util-keysyms-0.4.0-intel-2016a.eb # new file: _not_installed/x/xcb-util-renderutil/xcb-util-renderutil-0.3.9-foss-2016a.eb # new file: _not_installed/x/xcb-util-renderutil/xcb-util-renderutil-0.3.9-intel-2016a.eb # new file: _not_installed/x/xcb-util-wm/xcb-util-wm-0.4.1-foss-2016a.eb # new file: _not_installed/x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2015b-Python-2.7.11.eb # new file: _not_installed/x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2015b.eb # new file: _not_installed/x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2016a.eb # new file: _not_installed/x/xcb-util/xcb-util-0.4.0-foss-2016a.eb # new file: _not_installed/x/xcb-util/xcb-util-0.4.0-intel-2016a.eb # new file: _not_installed/y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb # new file: _not_installed/y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb # new file: _not_installed/y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb # modified: compare.sh # modified: compare_result.md # deleted: a/ALLPATHS-LG/ALLPATHS-LG-46968-goolf-1.4.10.eb # deleted: a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0-mt.eb # deleted: a/arpack-ng/arpack-ng-3.1.3-ictce-5.3.0.eb # deleted: a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0-mt.eb # deleted: a/arpack-ng/arpack-ng-3.1.3-ictce-5.5.0.eb # deleted: a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2-mt.eb # deleted: a/arpack-ng/arpack-ng-3.1.5-ictce-7.1.2.eb # deleted: a/arpack-ng/arpack-ng-3.3.0-GCC-4.9.3.eb # deleted: b/beagle-lib/beagle-lib-2.1.2-foss-2016a.eb # deleted: b/beagle-lib/beagle-lib-2.1.2-goolf-1.7.20.eb # deleted: b/beagle-lib/beagle-lib-20120124-goolf-1.4.10.eb # deleted: b/beagle-lib/beagle-lib-20120124-ictce-5.3.0.eb # deleted: b/beagle-lib/beagle-lib-20141202-intel-2015a.eb # deleted: c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.4.10.eb # deleted: c/ChIP-Seq/ChIP-Seq-1.5-1-goolf-1.7.20.eb # deleted: c/Clustering/clustering-2.6.6.eb # deleted: d/DBD-mysql/DBD-mysql-4.032-intel-2016a-Perl-5.22.2.eb # deleted: d/DBD-mysql/DBD-mysql-4.033-intel-2016b-Perl-5.24.0.eb # deleted: d/DFT-D3/DFT-D3-3.1.1-intel-2015a.eb # deleted: e/ea-utils/ea-utils-27a4809-foss-2016a.eb # deleted: e/ea-utils/ea-utils-27a4809-foss-2016b.eb # deleted: g/GEM-library/GEM-library-20130406-045632_pre-release-3_Linux-x86_64.eb # deleted: g/GMAP-GSNAP/GMAP-GSNAP-2014-01-21-goolf-1.4.10.eb # deleted: g/GMAP-GSNAP/GMAP-GSNAP-2014-06-10-goolf-1.4.10.eb # deleted: g/GMAP-GSNAP/GMAP-GSNAP-2015-12-31.v2-foss-2015b.eb # deleted: g/GMAP-GSNAP/GMAP-GSNAP-2016-05-01-foss-2016a.eb # deleted: g/GMAP-GSNAP/GMAP-GSNAP-2016-11-07-foss-2016b.eb # deleted: g/git-lfs/git-lfs-1.1.1.eb # deleted: i/I-TASSER/I-TASSER-4.0.eb # deleted: i/I-TASSER/I-TASSER-4.2.eb # deleted: m/MIGRATE-N/MIGRATE-N-4.2.8-foss-2016a.eb # deleted: m/MPJ-Express/MPJ-Express-0.44-foss-2016a-Java-1.8.0_92.eb # deleted: m/MPJ-Express/MPJ-Express-0.44-goolf-1.4.10-Java-1.7.0_75.eb # deleted: mv # deleted: n/netCDF-Fortran/netCDF-Fortran-4.2-ictce-6.1.5.eb # deleted: p/PARI-GP/PARI-GP-2.7.6-foss-2016a.eb # deleted: p/PhyloBayes-MPI/PhyloBayes-MPI-20161021-intel-2017.00.eb # deleted: p/Postgres-XL/Postgres-XL-9.5r1-intel-2016a-Python-2.7.11.eb # deleted: p/pkg-config/pkg-config-0.27.1-goolf-1.4.10.eb # deleted: p/pkg-config/pkg-config-0.27.1-ictce-5.3.0.eb # deleted: p/pkg-config/pkg-config-0.27.1-ictce-5.5.0.eb # deleted: p/pkg-config/pkg-config-0.27.1-intel-2015a.eb # deleted: p/pkg-config/pkg-config-0.28-GCC-4.8.2.eb # deleted: p/pkg-config/pkg-config-0.28-GCC-4.9.2.eb # deleted: p/pkg-config/pkg-config-0.28-GNU-4.9.3-2.25.eb # deleted: p/pkg-config/pkg-config-0.28-ictce-5.5.0.eb # deleted: p/pkg-config/pkg-config-0.28-intel-2015a.eb # deleted: p/pkg-config/pkg-config-0.29-gimkl-2.11.5.eb # deleted: p/pkg-config/pkg-config-0.29-intel-2015a.eb # deleted: p/pkg-config/pkg-config-0.29-intel-2015b.eb # deleted: p/prompt-toolkit/prompt-toolkit-1.0.3-foss-2016a-Python-2.7.11.eb # deleted: p/prompt-toolkit/prompt-toolkit-1.0.3-foss-2016a-Python-3.5.1.eb # deleted: p/prompt-toolkit/prompt-toolkit-1.0.6-foss-2016b-Python-2.7.12.eb # deleted: p/prompt-toolkit/prompt-toolkit-1.0.6-intel-2016b-Python-2.7.12.eb # deleted: p/prompt-toolkit/prompt-toolkit-1.0.6-intel-2016b-Python-3.5.2.eb # deleted: p/protobuf-python/protobuf-python-3.0.2-foss-2016a-Python-2.7.11.eb # deleted: p/protobuf-python/protobuf-python-3.0.2-foss-2016a-Python-3.5.1.eb # deleted: p/protobuf-python/protobuf-python-3.2.0-intel-2016b-Python-2.7.12.eb # deleted: p/protobuf-python/protobuf-python-3.2.0-intel-2016b-Python-3.5.2.eb # deleted: p/python-dateutil/python-dateutil-2.1-goolf-1.4.10-Python-2.7.3.eb # deleted: r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.2-foss-2016a-R-3.2.3.eb # deleted: r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.2-intel-2016a-R-3.2.3.eb # deleted: s/S-Lang/S-Lang-2.3.0-GCC-4.9.2.eb # deleted: s/STAR-Fusion/STAR-Fusion-0.6.0-goolf-1.4.10-Perl-5.16.3.eb # deleted: s/Saxon-HE/Saxon-HE-9.7.0.4-Java-1.7.0_79.eb # deleted: u/util-linux/util-linux-2.26.1-goolf-1.4.10.eb # deleted: u/util-linux/util-linux-2.26.1-intel-2015b.eb # deleted: v/VDE/VDE2-2.3.2-GCC-4.4.7-system.eb # deleted: x/Xerces-C++/Xerces-C++-3.1.1-foss-2015a.eb # deleted: x/Xerces-C++/Xerces-C++-3.1.1-intel-2015a.eb # deleted: x/Xerces-C++/Xerces-C++-3.1.2-foss-2015a.eb # deleted: x/Xerces-C++/Xerces-C++-3.1.2-goolf-1.7.20.eb # deleted: x/Xerces-C++/Xerces-C++-3.1.2-intel-2015a.eb # deleted: x/xcb-util-image/xcb-util-image-0.4.0-foss-2016a.eb # deleted: x/xcb-util-image/xcb-util-image-0.4.0-intel-2015b.eb # deleted: x/xcb-util-image/xcb-util-image-0.4.0-intel-2016a.eb # deleted: x/xcb-util-keysyms/xcb-util-keysyms-0.4.0-foss-2016a.eb # deleted: x/xcb-util-keysyms/xcb-util-keysyms-0.4.0-intel-2016a.eb # deleted: x/xcb-util-renderutil/xcb-util-renderutil-0.3.9-foss-2016a.eb # deleted: x/xcb-util-renderutil/xcb-util-renderutil-0.3.9-intel-2016a.eb # deleted: x/xcb-util-wm/xcb-util-wm-0.4.1-foss-2016a.eb # deleted: x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2015b-Python-2.7.11.eb # deleted: x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2015b.eb # deleted: x/xcb-util-wm/xcb-util-wm-0.4.1-intel-2016a.eb # deleted: x/xcb-util/xcb-util-0.4.0-foss-2016a.eb # deleted: x/xcb-util/xcb-util-0.4.0-intel-2016a.eb # deleted: y/YAML-Syck/YAML-Syck-1.27-goolf-1.4.10-Perl-5.16.3.eb # deleted: y/YAML-Syck/YAML-Syck-1.27-ictce-4.1.13-Perl-5.16.3.eb # deleted: y/YAML-Syck/YAML-Syck-1.27-ictce-5.3.0-Perl-5.16.3.eb
48 lines
1.3 KiB
Plaintext
48 lines
1.3 KiB
Plaintext
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
|
|
# Author: Pablo Escobar Lopez
|
|
# sciCORE - University of Basel
|
|
# SIB Swiss Institute of Bioinformatics
|
|
|
|
easyblock = 'Tarball'
|
|
|
|
name = 'MPJ-Express'
|
|
version = '0.44'
|
|
versionsuffix = '-Java-%(javaver)s'
|
|
|
|
homepage = 'http://mpj-express.org/'
|
|
description = """MPJ Express is an open source Java message passing library that allows application
|
|
developers to write and execute parallel applications for multicore processors and compute clusters/clouds."""
|
|
|
|
toolchain = {'name': 'foss', 'version': '2016a'}
|
|
|
|
source_urls = ['https://sourceforge.net/projects/mpjexpress/files/releases/']
|
|
sources = ['mpj-v%s.tar.gz' % (version.replace('.','_'))]
|
|
|
|
builddependencies = [('CMake', '3.5.2')]
|
|
|
|
dependencies = [
|
|
('Java', '1.8.0_92', '', True),
|
|
]
|
|
|
|
# compile JNI wrapper library as described in docs
|
|
# http://mpj-express.org/docs/readme/README
|
|
postinstallcmds = [
|
|
"mkdir %(installdir)s/src/mpjdev/natmpjdev/lib/build",
|
|
"cd %(installdir)s/src/mpjdev/natmpjdev/lib/build && cmake .. && make && make install DESTDIR=%(installdir)s",
|
|
]
|
|
|
|
modextrapaths = {
|
|
'CLASSPATH': 'lib',
|
|
}
|
|
|
|
modextravars = {
|
|
'MPJ_HOME': '$root', # MPJ_HOME points to install directory
|
|
}
|
|
|
|
sanity_check_paths = {
|
|
'files': ['lib/libnativempjdev.so', 'bin/mpjrun.sh'],
|
|
'dirs': []
|
|
}
|
|
|
|
moduleclass = 'lib'
|