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552506bdb2
new file: h/HTSlib/HTSlib-1.9-intel-2017a.eb modified: o/OpenFOAM/OpenFOAM-6-foss-2018a.eb new file: r/R/MCMCpack-1.4-4_icpc-wd308.patch modified: r/R/R-3.5.3-intel-2017a.eb modified: s/SAMtools/SAMtools-1.9-intel-2017a.eb
48 lines
1.1 KiB
Plaintext
48 lines
1.1 KiB
Plaintext
# IT4Innovations 2019
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easyblock = 'ConfigureMake'
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name = 'BCFtools'
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version = '1.9'
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homepage = 'http://www.htslib.org/'
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description = """Samtools is a suite of programs for interacting with high-throughput sequencing data.
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BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants"""
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toolchain = {'name': 'intel', 'version': '2017a'}
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toolchainopts = {'optarch': True, 'pic': True}
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sources = [SOURCELOWER_TAR_BZ2]
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source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
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dependencies = [
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('zlib', '1.2.11', '', True),
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('HTSlib', '1.9'),
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('GSL', '2.5'),
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('XZ', '5.2.4', '', True),
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]
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parallel = 1
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skipsteps = ['configure']
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buildopts = 'CC="$CC" CFLAGS="$CFLAGS" USE_GSL=1'
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installopts = ' prefix=%(installdir)s'
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postinstallcmds = [
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'mkdir -p %(installdir)s/lib/plugins',
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'cp -a plugins/*.so %(installdir)s/lib/plugins/.',
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]
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sanity_check_paths = {
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'files': [
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'bin/%s' %
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x for x in [
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'bcftools',
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'plot-vcfstats',
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'vcfutils.pl']],
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'dirs': ['lib/plugins'],
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}
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moduleclass = 'bio'
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