mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-16 03:38:05 +01:00
363 lines
13 KiB
Plaintext
363 lines
13 KiB
Plaintext
name = 'R'
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version = '3.2.0'
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homepage = 'http://www.r-project.org/'
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description = """R is a free software environment for statistical computing and graphics."""
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toolchain = {'name': 'goolf', 'version': '1.7.20'}
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sources = [SOURCE_TAR_GZ]
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source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s']
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preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"'
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configopts = "--with-lapack --with-blas --with-pic --enable-threads --with-x=no --enable-R-shlib"
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# some recommended packages may fail in a parallel build (e.g. Matrix),
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# and we're installing them anyway below
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configopts += " --with-recommended-packages=no"
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dependencies = [
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('libreadline', '6.3'),
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('ncurses', '5.9'),
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('libpng', '1.6.17'), # for plotting in R
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('libjpeg-turbo', '1.4.0'), # for plottting in R
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# Java bindings are built if Java is found, might as well provide it
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('Java', '1.7.0_80', '', True),
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('Tcl', '8.6.4'), # for tcltk
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('Tk', '8.6.4', '-no-X11'), # for tcltk
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('cURL', '7.43.0'), # for RCurl
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('libxml2', '2.9.2'), # for XML
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]
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name_tmpl = '%(name)s_%(version)s.tar.gz'
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ext_options = {
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'source_urls': [
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# package archive
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'http://cran.r-project.org/src/contrib/Archive/%(name)s',
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'http://cran.r-project.org/src/contrib/', # current version of packages
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# mirror alternative for current packages
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'http://cran.freestatistics.org/src/contrib',
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],
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'source_tmpl': name_tmpl,
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}
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# !! order of packages is important !!
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# packages updated on January 8th 2015
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exts_list = [
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# default libraries, only here to sanity check their presence
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'base',
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'datasets',
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'graphics',
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'grDevices',
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'grid',
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'methods',
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'splines',
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'stats',
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'stats4',
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'tools',
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'utils',
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# non-standard libraries, should be specified with fixed versions!
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# Rmpi segfaults (on some systems) when built with goolf/1.7.20?
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#('Rmpi', '0.6-5', dict(ext_options.items() + [('patches', ['Rmpi-0.6-5_impi5.patch'])])),
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('abind', '1.4-3', ext_options),
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('magic', '1.5-6', ext_options),
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('geometry', '0.3-5', ext_options),
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('bit', '1.1-12', ext_options),
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('filehash', '2.2-2', ext_options),
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('ff', '2.2-13', ext_options),
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('bnlearn', '3.7.1', ext_options),
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('bootstrap', '2015.2', ext_options),
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('combinat', '0.0-8', ext_options),
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('deal', '1.2-37', ext_options),
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('fdrtool', '1.2.14', ext_options),
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('formatR', '1.2', ext_options),
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('gtools', '3.4.2', ext_options),
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('gdata', '2.13.3', ext_options),
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('GSA', '1.03', ext_options),
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('highr', '0.5', ext_options),
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('infotheo', '1.2.0', ext_options),
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('lars', '1.2', ext_options),
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('lazy', '1.2-15', ext_options),
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('kernlab', '0.9-20', ext_options),
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('mime', '0.3', ext_options),
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('markdown', '0.7.7', ext_options),
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('mlbench', '2.1-1', ext_options),
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('NLP', '0.1-6', ext_options),
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('mclust', '5.0.1', ext_options),
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('RANN', '2.5', ext_options),
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('rmeta', '2.16', ext_options),
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('segmented', '0.5-1.1', ext_options),
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('som', '0.3-5', ext_options),
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('SuppDists', '1.1-9.1', ext_options),
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('stabledist', '0.6-6', ext_options),
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('survivalROC', '1.0.3', ext_options),
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('pspline', '1.0-16', ext_options),
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('timeDate', '3012.100', ext_options),
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('longmemo', '1.0-0', ext_options),
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('ADGofTest', '0.3', ext_options),
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('ade4', '1.7-2', ext_options),
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('AlgDesign', '1.1-7.3', ext_options),
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('base64enc', '0.1-2', ext_options),
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('BH', '1.55.0-3', ext_options),
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('brew', '1.0-6', ext_options),
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('Brobdingnag', '1.2-4', ext_options),
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('corpcor', '1.6.7', ext_options),
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('longitudinal', '1.1.11', ext_options),
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('checkmate', '1.5.2', ext_options),
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('cubature', '1.1-2', ext_options),
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('DEoptimR', '1.0-2', ext_options),
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('digest', '0.6.8', ext_options),
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('fastmatch', '1.0-4', ext_options),
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('ffbase', '0.11.3', ext_options),
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('iterators', '1.0.7', ext_options),
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('maps', '2.3-9', ext_options),
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('nnls', '1.4', ext_options),
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('sendmailR', '1.2-1', ext_options),
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('spam', '1.0-1', ext_options),
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('subplex', '1.1-4', ext_options),
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('stringr', '0.6.2', ext_options),
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('evaluate', '0.7', ext_options),
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('logspline', '2.1.5', ext_options),
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('ncbit', '2013.03.29', ext_options),
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('permute', '0.8-3', ext_options),
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('plotrix', '3.5-11', ext_options),
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('randomForest', '4.6-10', ext_options),
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('scatterplot3d', '0.3-35', ext_options),
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('SparseM', '1.6', ext_options),
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('tripack', '1.3-6', ext_options),
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('irace', '1.06', ext_options),
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('rJava', '0.9-6', ext_options),
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('lattice', '0.20-31', ext_options),
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('RColorBrewer', '1.1-2', ext_options),
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('latticeExtra', '0.6-26', ext_options),
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('Matrix', '1.2-0', ext_options),
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('png', '0.1-7', ext_options),
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('Rcpp', '0.11.5', ext_options),
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('RcppArmadillo', '0.5.000.0', ext_options),
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('plyr', '1.8.2', ext_options),
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('pROC', '1.7.3', ext_options),
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('quadprog', '1.5-5', ext_options),
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('BB', '2014.10-1', ext_options),
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('BBmisc', '1.9', ext_options),
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('fail', '1.2', ext_options),
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('rlecuyer', '0.3-3', ext_options),
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('snow', '0.3-13', ext_options),
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('MASS', '7.3-40', ext_options),
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('tree', '1.0-35', ext_options),
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('pls', '2.4-3', ext_options),
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('class', '7.3-12', ext_options),
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('e1071', '1.6-4', ext_options),
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('nnet', '7.3-9', ext_options),
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('nlme', '3.1-120', ext_options),
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('minqa', '1.2.4', ext_options),
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('RcppEigen', '0.3.2.4.0', ext_options),
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('quantreg', '5.11', ext_options),
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('mgcv', '1.8-6', ext_options),
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('colorspace', '1.2-6', ext_options),
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('robustbase', '0.92-3', ext_options),
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('sp', '1.1-0', ext_options),
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('vcd', '1.3-2', ext_options),
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('snowfall', '1.84-6', ext_options),
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('rpart', '4.1-9', ext_options),
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('mice', '2.22', ext_options),
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('urca', '1.2-8', ext_options),
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('fracdiff', '1.4-2', ext_options),
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('logistf', '1.21', ext_options),
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('akima', '0.5-11', ext_options),
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('bitops', '1.0-6', ext_options),
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('boot', '1.3-15', ext_options),
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('mixtools', '1.0.3', ext_options),
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('cluster', '2.0.1', ext_options),
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('gclus', '1.3.1', ext_options),
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('coda', '0.17-1', ext_options),
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('codetools', '0.2-11', ext_options),
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('foreach', '1.4.2', ext_options),
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('doMC', '1.3.3', ext_options),
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('DBI', '0.3.1', ext_options),
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('foreign', '0.8-63', ext_options),
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('survival', '2.38-1', ext_options),
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('gam', '1.09.1', ext_options),
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('gamlss.data', '4.2-7', ext_options),
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('gamlss.dist', '4.3-4', ext_options),
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('hwriter', '1.3.2', ext_options),
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('KernSmooth', '2.23-14', ext_options),
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('zoo', '1.7-12', ext_options),
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('xts', '0.9-7', ext_options),
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('TTR', '0.22-0', ext_options),
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('quantmod', '0.4-4', ext_options),
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('lmtest', '0.9-33', ext_options),
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('mnormt', '1.5-2', ext_options),
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('mvtnorm', '1.0-2', ext_options),
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('pcaPP', '1.9-60', ext_options),
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('numDeriv', '2012.9-1', ext_options),
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('lava', '1.4.0', ext_options),
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('prodlim', '1.5.1', ext_options),
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('pscl', '1.4.9', ext_options),
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('RSQLite', '1.0.0', ext_options),
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('BatchJobs', '1.6', ext_options),
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('sandwich', '2.3-3', ext_options),
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('sfsmisc', '1.0-27', ext_options),
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('spatial', '7.3-9', ext_options),
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('VGAM', '0.9-7', ext_options),
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('waveslim', '1.7.5', ext_options),
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('xtable', '1.7-4', ext_options),
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('profileModel', '0.5-9', ext_options),
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('brglm', '0.5-9', ext_options),
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('deSolve', '1.11', ext_options),
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('tseriesChaos', '0.1-13', ext_options),
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('tseries', '0.10-34', ext_options),
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('fastICA', '1.2-0', ext_options),
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('R.methodsS3', '1.7.0', ext_options),
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('R.oo', '1.19.0', ext_options),
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('cgdsr', '1.1.33', ext_options),
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('R.utils', '2.0.1', ext_options),
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('R.matlab', '3.2.0', ext_options),
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('gbm', '2.1.1', ext_options),
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('dichromat', '2.0-0', ext_options),
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('Formula', '1.2-1', ext_options),
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('acepack', '1.3-3.3', ext_options),
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('reshape2', '1.4.1', ext_options),
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('gtable', '0.1.2', ext_options),
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('munsell', '0.4.2', ext_options),
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('labeling', '0.3', ext_options),
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('scales', '0.2.4', ext_options),
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('proto', '0.3-10', ext_options),
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('ggplot2', '1.0.1', ext_options),
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('Hmisc', '3.15-0', ext_options),
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('fastcluster', '1.1.16', ext_options),
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('chron', '2.3-45', ext_options),
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('data.table', '1.9.4', ext_options),
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('igraph', '0.7.1', ext_options),
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('GeneNet', '1.2.12', ext_options),
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('ape', '3.2', ext_options),
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('htmltools', '0.2.6', ext_options),
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('RJSONIO', '1.3-0', ext_options),
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('caTools', '1.17.1', ext_options),
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('gplots', '2.16.0', ext_options),
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('ROCR', '1.0-7', ext_options),
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('httpuv', '1.3.2', ext_options),
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('R6', '2.0.1', ext_options),
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('shiny', '0.11.1', ext_options),
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('adegenet', '1.4-2', ext_options),
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('phylobase', '0.6.8', ext_options),
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('adephylo', '1.1-6', ext_options),
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('animation', '2.3', ext_options),
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('bigmemory.sri', '0.1.3', ext_options),
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('bigmemory', '4.4.6', ext_options),
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('calibrate', '1.7.2', ext_options),
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('clusterGeneration', '1.3.4', ext_options),
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('raster', '2.3-40', ext_options),
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('dismo', '1.0-12', ext_options),
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('expm', '0.99-1.1', ext_options),
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('extrafontdb', '1.0', ext_options),
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('Rttf2pt1', '1.3.3', ext_options),
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('extrafont', '0.17', ext_options),
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('fields', '8.2-1', ext_options),
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('shapefiles', '0.7', ext_options),
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('fossil', '0.3.7', ext_options),
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('geiger', '2.0.3', ext_options),
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('glmnet', '2.0-2', ext_options),
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('labdsv', '1.6-1', ext_options),
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('MatrixModels', '0.4-0', ext_options),
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('stabs', '0.5-1', ext_options),
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('mboost', '2.4-2', ext_options),
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('msm', '1.5', ext_options),
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('nor1mix', '1.2-0', ext_options),
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('np', '0.60-2', ext_options),
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('polynom', '1.3-8', ext_options),
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('quantreg', '5.11', ext_options),
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('polspline', '1.1.9', ext_options),
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('TH.data', '1.0-6', ext_options),
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('multcomp', '1.4-0', ext_options),
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('gridExtra', '0.9.1', ext_options),
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('rms', '4.3-0', ext_options),
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('RWekajars', '3.7.12-1', ext_options),
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('RWeka', '0.4-24', ext_options),
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('slam', '0.1-32', ext_options),
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('tm', '0.6', ext_options),
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('TraMineR', '1.8-9', ext_options),
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('chemometrics', '1.3.9', ext_options),
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('FNN', '1.1', ext_options),
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('ipred', '0.9-4', ext_options),
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('yaml', '2.1.13', ext_options),
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('knitr', '1.10', ext_options),
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('statmod', '1.4.21', ext_options),
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('miscTools', '0.6-16', ext_options),
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('maxLik', '1.2-4', ext_options),
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('mlogit', '0.2-4', ext_options),
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('getopt', '1.20.0', ext_options),
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('gsalib', '2.1', ext_options),
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('reshape', '0.8.5', ext_options),
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('optparse', '1.3.0', ext_options),
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('klaR', '0.6-12', ext_options),
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('neuRosim', '0.2-12', ext_options),
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('locfit', '1.5-9.1', ext_options),
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('GGally', '0.5.0', ext_options),
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('beanplot', '1.2', ext_options),
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('clValid', '0.6-6', ext_options),
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('matrixStats', '0.14.0', ext_options),
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('DiscriMiner', '0.1-29', ext_options),
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('ellipse', '0.3-8', ext_options),
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('leaps', '2.9', ext_options),
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('nloptr', '1.0.4', ext_options),
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('lme4', '1.1-8', ext_options),
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('pbkrtest', '0.4-2', ext_options),
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('car', '2.0-25', ext_options),
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('flashClust', '1.01-2', ext_options),
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('FactoMineR', '1.29', ext_options),
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('modeltools', '0.2-21', ext_options),
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('flexclust', '1.3-4', ext_options),
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('flexmix', '2.3-13', ext_options),
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('prabclus', '2.2-6', ext_options),
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('diptest', '0.75-6', ext_options),
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('trimcluster', '0.1-2', ext_options),
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('fpc', '2.1-9', ext_options),
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('BiasedUrn', '1.06.1', ext_options),
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('TeachingDemos', '2.9', ext_options),
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('jsonlite', '0.9.16', ext_options),
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('kohonen', '2.0.18', ext_options),
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('base64', '1.1', ext_options),
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('registry', '0.2', ext_options),
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('pkgmaker', '0.22', ext_options),
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('rngtools', '1.2.4', ext_options),
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('doRNG', '1.6', ext_options),
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('nleqslv', '2.7', ext_options),
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('RGCCA', '2.0', ext_options),
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('pheatmap', '1.0.2', ext_options),
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('openxlsx', '2.4.0', ext_options),
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('pvclust', '1.3-2', ext_options),
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('RCircos', '1.1.2', ext_options),
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('VennDiagram', '1.6.9', ext_options),
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('xlsxjars', '0.6.1', ext_options),
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('xlsx', '0.5.7', ext_options),
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('vegan', '2.3-0', ext_options),
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('forecast', '6.1', ext_options),
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('fma', '2.01', ext_options),
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('expsmooth', '2.3', ext_options),
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('fpp', '0.5', ext_options),
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('XML', '3.98-1.1', ext_options),
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('memoise', '0.2.1', ext_options),
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('crayon', '1.3.1', ext_options),
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('testthat', '0.10.0', ext_options),
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('rmarkdown', '0.7', ext_options),
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('curl', '0.9.1', ext_options),
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('RCurl', '1.95-4.7', ext_options),
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('httr', '0.6.1', ext_options),
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('maptools', '0.8-36', ext_options),
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('deldir', '0.1-9', ext_options),
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('tensor', '1.5', ext_options),
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('polyclip', '1.3-0', ext_options),
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('goftest', '1.0-2', ext_options),
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('spatstat', '1.41-1', ext_options),
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('gdalUtils', '0.3.1', ext_options),
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('pracma', '1.8.3', ext_options),
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('bio3d', '2.2-2', ext_options),
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('penalized', '0.9-45', ext_options),
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('coin', '1.0-24', ext_options),
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('clusterRepro', '0.5-1.1', ext_options),
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('randomForestSRC', '2.0.7', ext_options),
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('sm', '2.2-5.4', ext_options),
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]
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moduleclass = 'lang'
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