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31 lines
1007 B
Plaintext
31 lines
1007 B
Plaintext
easyblock = 'Tarball'
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name = 'GATK'
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version = '2.6-5'
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homepage = 'http://www.broadinstitute.org/gatk/'
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description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute
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to analyse next-generation resequencing data. The toolkit offers a wide variety of tools,
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with a primary focus on variant discovery and genotyping as well as strong emphasis on
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data quality assurance. Its robust architecture, powerful processing engine and
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high-performance local_computing features make it capable of taking on projects of any size."""
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toolchain = SYSTEM
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# download manually from http://www.broadinstitute.org/gatk/download
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sources = ['GenomeAnalysisTK-%(version)s.tar.bz2']
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java = 'Java'
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javaver = '1.7.0_79'
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versionsuffix = '-%s-%s' % (java, javaver)
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dependencies = [(java, javaver)]
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modaliases = {'gatk': "java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar"}
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sanity_check_paths = {
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'files': ["GenomeAnalysisTK.jar"],
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'dirs': ["resources"],
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}
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moduleclass = 'bio'
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