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58 lines
1.4 KiB
Plaintext
58 lines
1.4 KiB
Plaintext
easyblock = "Tarball"
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name = 'orthomcl'
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version = '2.0.8'
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homepage = 'http://orthomcl.org/'
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description = """OrthoMCL is a genome-scale algorithm for grouping orthologous protein sequences."""
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toolchain = {'name': 'goolf', 'version': '1.4.10'}
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sources = ['%(name)sSoftware-v%(version)s.tar.gz']
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source_urls = [
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'http://orthomcl.org/common/downloads/software/v%s/' %
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'.'.join(
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version.split('.')[
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:2])]
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patches = ['orthomcl_fix-perl-hashbang.patch']
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# a Perl installation providing the DBI module is required
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perl = 'Perl'
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perlver = '5.16.3'
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versionsuffix = '-%s-%s' % (perl, perlver)
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dependencies = [
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(perl, perlver),
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('MCL', '12.135'),
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]
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sanity_check_paths = {
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'files': [
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'bin/orthomcl%s' %
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bin for bin in [
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'AdjustFasta',
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'BlastParser',
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'DropSchema',
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'DumpPairsFiles',
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'ExtractProteinIdsFromGroupsFile',
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'ExtractProteinPairsFromGroupsFile',
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'FilterFasta',
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'InstallSchema',
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'LoadBlast',
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'MclToGroups',
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'Pairs',
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'ReduceFasta',
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'ReduceGroups',
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'RemoveIdenticalGroups',
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'Singletons',
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'SortGroupMembersByScore',
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'SortGroupsFile']],
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'dirs': ['lib/perl/OrthoMCLEngine'],
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}
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modextrapaths = {'PERL5LIB': 'lib/perl'}
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sanity_check_commands = [('perl', '-e "use OrthoMCLEngine::Main::Base"')]
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moduleclass = 'bio'
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