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39 lines
1.6 KiB
Plaintext
39 lines
1.6 KiB
Plaintext
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
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# Author: Pablo Escobar Lopez
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# Swiss Institute of Bioinformatics
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# Biozentrum - University of Basel
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# Modified by: Robert Schmidt <rjeschmi@gmail.com>
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# Ottawa Hospital Research Institute - Bioinformatics Team
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easyblock = 'MakeCp'
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name = 'Bowtie2'
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version = '2.2.4'
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homepage = 'http://bowtie-bio.sourceforge.net/bowtie2/index.shtml'
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description = """ Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads
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to long reference sequences. It is particularly good at aligning reads of about 50 up to 100s or 1,000s
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of characters, and particularly good at aligning to relatively long (e.g. mammalian) genomes.
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Bowtie 2 indexes the genome with an FM Index to keep its memory footprint small: for the human genome,
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its memory footprint is typically around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes."""
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toolchain = {'name': 'goolf', 'version': '1.4.10'}
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sources = ['%(namelower)s-%(version)s-source.zip']
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source_urls = [('http://sourceforge.net/projects/bowtie-bio/files/%(namelower)s/%(version)s', 'download')]
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files_to_copy = [
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(["bowtie2", "bowtie2-align-l", "bowtie2-align-s", "bowtie2-build", "bowtie2-build-l", "bowtie2-build-s",
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"bowtie2-inspect", "bowtie2-inspect-l", "bowtie2-inspect-s"], 'bin'),
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"doc", "example", "scripts", "MANUAL", "MANUAL.markdown", "NEWS"]
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sanity_check_paths = {
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'files': ["bin/bowtie2-align-l", "bin/bowtie2-build", "bin/bowtie2-inspect"],
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'dirs': [],
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}
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# to add script folder to path just uncomment this line
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#modextrapaths = {'PATH': 'scripts'}
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moduleclass = 'bio'
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