mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-13 10:21:22 +01:00
56 lines
1.6 KiB
Plaintext
56 lines
1.6 KiB
Plaintext
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
|
|
# Author: Pablo Escobar Lopez
|
|
# sciCORE - University of Basel
|
|
# SIB Swiss Institute of Bioinformatics
|
|
|
|
easyblock = 'MakeCp'
|
|
|
|
name = 'fastQValidator'
|
|
version = '0.1.1a-20151214'
|
|
fastqvalidator_git_commit = 'aadc6f9'
|
|
libstatgen_git_commit = '8246906'
|
|
versionsuffix = '-%s' % fastqvalidator_git_commit
|
|
|
|
homepage = 'http://genome.sph.umich.edu/wiki/FastQValidator'
|
|
description = """Validate FastQ Files"""
|
|
|
|
toolchain = {'name': 'goolf', 'version': '1.7.20'}
|
|
|
|
# we download latest source available in github for fastQValidator and libStatGen (dependency)
|
|
# using latest release tags doesn't work
|
|
# https://github.com/statgen/fastQValidator/issues/9
|
|
source_urls = [
|
|
'https://github.com/statgen/fastQValidator/archive/',
|
|
'https://github.com/statgen/libStatGen/archive/'
|
|
]
|
|
|
|
sources = [
|
|
'%s.tar.gz' % fastqvalidator_git_commit,
|
|
'%s.tar.gz' % libstatgen_git_commit
|
|
]
|
|
|
|
dependencies = [
|
|
('zlib', '1.2.8'),
|
|
# ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's
|
|
# nice to have an up to date openssl for security reasons
|
|
]
|
|
|
|
# openssl required by libStatgen
|
|
osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')]
|
|
|
|
prebuildopts = 'CFLAGS="$CFLAGS -L${EBROOTZLIB}/lib" && '
|
|
prebuildopts += 'mv %(builddir)s/libStatGen-* %(builddir)s/libStatGen && '
|
|
|
|
buildopts = ' LIB_PATH_GENERAL=../libStatGen '
|
|
|
|
files_to_copy = [(['bin/fastQValidator'], 'bin')]
|
|
|
|
parallel = 1
|
|
|
|
sanity_check_paths = {
|
|
'files': ['bin/fastQValidator'],
|
|
'dirs': [],
|
|
}
|
|
|
|
moduleclass = 'bio'
|