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51 lines
1.8 KiB
Plaintext
51 lines
1.8 KiB
Plaintext
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
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# Author: Pablo Escobar Lopez
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# sciCORE - University of Basel
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# SIB Swiss Institute of Bioinformatics
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easyblock='MakeCp'
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name = 'Minimac2'
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version = '2014.9.15'
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homepage = 'http://genome.sph.umich.edu/wiki/Minimac2'
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description = """minimac2 is an improved version of Minimac. It is designed to work on phased
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genotypes and can handle very large reference panels with hundreds or thousands of haplotypes.
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The name has two parts. The first, mini, refers to the modest amount of computational resources it requires.
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The second, mac, is short hand for MaCH, our widely used algorithm for genotype imputation."""
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toolchain = {'name': 'goolf', 'version': '1.7.20'}
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source_urls = ['http://csg.sph.umich.edu/cfuchsb/']
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sources = ['%(namelower)s.%(version)s.src.tgz']
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osdependencies = [('openssl-devel', 'libssl-dev', 'libopenssl-devel')]
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dependencies = [
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('zlib', '1.2.8'),
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# This app also depends in openblas
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# ('OpenSSL', '1.0.1q'), # OS dependency should be preferred if the os version is more recent then this version, it's
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# nice to have an up to date openssl for security reasons
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]
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# firt move to folder libStatGen to run make clean && make
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# make clean is mandatory because the sources tarball includes
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# files from previous build
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prebuildopts = ["cd libStatGen && make clean && "]
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# in libStatGen folder run just "make"
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# in minimac folder run "make clean && make opt && make openmp"
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buildopts = [" && cd ../minimac2 && make clean && make opt && make openmp"]
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# parallel build fails
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parallel = 1
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files_to_copy = [(["minimac2/bin/minimac2", "minimac2/bin/minimac2-omp"], "bin")]
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sanity_check_paths = {
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'files': ['bin/minimac2', 'bin/minimac2-omp'],
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'dirs': []
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}
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moduleclass = 'bio'
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