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49 lines
1.7 KiB
Plaintext
49 lines
1.7 KiB
Plaintext
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
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# Author: Pablo Escobar Lopez
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# sciCORE - University of Basel
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# SIB Swiss Institute of Bioinformatics
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easyblock = 'ConfigureMake'
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name = 'ChIP-Seq'
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version = '1.5-1'
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homepage = 'http://chip-seq.sourceforge.net/'
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description = """The ChIP-Seq software provides methods for the analysis of ChIP-seq data and
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other types of mass genome annotation data. The most common analysis tasks include positional
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correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions."""
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toolchain = {'name': 'goolf', 'version': '1.4.10'}
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source_urls = ['http://downloads.sourceforge.net/project/chip-seq/chip-seq/%(version)s/']
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sources = ['%(namelower)s.%(version)s.tar.gz']
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skipsteps = ['configure']
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buildopts = ' CC=$CC'
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preinstallopts = 'mkdir -p %(installdir)s/bin && '
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installopts = ' binDir=%(installdir)s/bin && '
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installopts += 'mkdir -p %(installdir)s/man/man1 && '
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installopts += 'make man manDir=%(installdir)s/man/man1/ && '
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installopts += 'cp -a tools/ %(installdir)s && '
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installopts += 'cp -a README doc/ %(installdir)s'
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sanity_check_paths = {
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'files': ["bin/%s" % x for x in ["chipcenter", "chipcor", "chipextract", "chippart", "chippeak",
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"chipscore", "compactsga", "counts_filter", "countsga", "featreplace"]],
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'dirs': []
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}
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# add tools dir to PATH
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modextrapaths = {
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'PATH': "tools",
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}
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# fix shebang line in all provided perl scripts in tools folder
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postinstallcmds = ["sed -i -e 's|/usr/bin/perl|/usr/bin/env\ perl|' %(installdir)s/tools/*.pl",
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"sed -i -e 's|/usr/local/bin/perl|/usr/bin/env\ perl|' %(installdir)s/tools/*.pl"]
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moduleclass = 'bio'
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