mirror of
https://code.it4i.cz/sccs/easyconfigs-it4i.git
synced 2025-04-16 19:50:50 +01:00
39 lines
1.1 KiB
Plaintext
39 lines
1.1 KiB
Plaintext
# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
|
|
# Author: Pablo Escobar Lopez
|
|
# Swiss Institute of Bioinformatics
|
|
# Biozentrum - University of Basel
|
|
|
|
name = 'Trinity'
|
|
version = '2.2.0'
|
|
|
|
homepage = 'http://trinityrnaseq.github.io/'
|
|
description = """Trinity represents a novel method for the efficient and robust de novo reconstruction
|
|
of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm,
|
|
Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads."""
|
|
|
|
toolchain = {'name': 'foss', 'version': '2016a'}
|
|
|
|
source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/']
|
|
sources = ['v%(version)s.tar.gz']
|
|
|
|
patches = [
|
|
'chrysalis_commandline_noconsts_2012-10-05.patch',
|
|
'Trinity-2.2.0_jellyfish-Makefile.patch',
|
|
]
|
|
|
|
builddependencies = [
|
|
('Autotools', '20150215'),
|
|
]
|
|
|
|
dependencies = [
|
|
('Java', '1.8.0_92', '', True),
|
|
('ant', '1.9.7', '-Java-%(javaver)s', True),
|
|
('Bowtie', '1.1.2'),
|
|
('Bowtie2', '2.2.8'),
|
|
('ncurses', '6.0',),
|
|
('zlib', '1.2.8'),
|
|
('Perl', '5.22.1'),
|
|
]
|
|
|
|
moduleclass = 'bio'
|