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38 lines
1.0 KiB
Plaintext
38 lines
1.0 KiB
Plaintext
name = 'Trinity'
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version = '2.1.1'
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homepage = 'http://trinityrnaseq.github.io'
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description = """Trinity represents a novel method for the efficient and robust de novo reconstruction
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of transcriptomes from RNA-Seq data. Trinity combines three independent software modules: Inchworm,
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Chrysalis, and Butterfly, applied sequentially to process large volumes of RNA-Seq reads."""
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toolchain = {'name': 'intel', 'version': '2015b'}
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toolchainopts = {'optarch': True}
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source_urls = ['https://github.com/trinityrnaseq/trinityrnaseq/archive/']
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java = 'Java'
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javaver = '1.8.0_66'
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sources = ['v%(version)s.tar.gz']
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patches = [
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'chrysalis_commandline_noconsts_2012-10-05.patch',
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'Trinity-%(version)s_jellyfish-Makefile.patch',
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]
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builddependencies = [
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('Autotools', '20150215', '', ('GNU', '4.9.3-2.25')),
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]
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dependencies = [
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(java, javaver, '', True),
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('ant', '1.9.6', '-%s-%s' % (java, javaver), True),
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('Bowtie', '1.1.2'),
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('Bowtie2', '2.2.6'),
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('ncurses', '5.9',),
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('zlib', '1.2.8'),
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('Perl', '5.20.3'),
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]
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moduleclass = 'bio'
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