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38 lines
970 B
Plaintext
38 lines
970 B
Plaintext
easyblock = 'ConfigureMake'
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name = 'BCFtools'
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version = '1.3'
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homepage = 'http://www.htslib.org/'
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description = """Samtools is a suite of programs for interacting with high-throughput sequencing data.
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BCFtools - Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants"""
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toolchain = {'name': 'foss', 'version': '2015g'}
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toolchainopts = {'optarch': True, 'pic': True}
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sources = [SOURCELOWER_TAR_BZ2]
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source_urls = ['https://github.com/samtools/%(namelower)s/releases/download/%(version)s']
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dependencies = [
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('HTSlib', '1.3'),
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('zlib', '1.2.8'),
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]
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parallel = 1
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skipsteps = ['configure']
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installopts = ' prefix=%(installdir)s'
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postinstallcmds = [
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'mkdir -p %(installdir)s/lib/plugins',
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'cp plugins/*.so %(installdir)s/lib/plugins/.',
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]
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sanity_check_paths = {
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'files': ['bin/%s' % x for x in ['bcftools', 'plot-vcfstats', 'vcfutils.pl']],
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'dirs': ['lib/plugins'],
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}
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moduleclass = 'bio'
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