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37 lines
842 B
Plaintext
37 lines
842 B
Plaintext
easyblock = 'MakeCp'
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name = 'BBMap'
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version = '35.82'
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homepage = 'https://sourceforge.net/projects/bbmap/'
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description = """BBMap short read aligner, and other bioinformatic tools."""
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toolchain = {'name': 'foss', 'version': '2015b'}
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source_urls = [SOURCEFORGE_SOURCE]
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sources = ['%(name)s_%(version)s.tar.gz' ]
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java = 'Java'
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javaver = '1.8.0_74'
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versionsuffix = '-%s-%s' % (java, javaver)
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dependencies = [(java, javaver, '', True)]
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prebuildopts = 'cd jni && '
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suff = {'Darwin': 'osx', 'Linux': 'linux'}[OS_TYPE]
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buildopts = "-f makefile.%s" % suff
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files_to_copy = ['*']
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sanity_check_paths = {
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'files': ['bbmap.sh'],
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'dirs': []
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}
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modextrapaths = {'PATH': ''}
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modloadmsg = """For improved speed, add 'usejni=t' to the command line of %(name)s tools which support the use of the
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compiled jni C code."""
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moduleclass = 'bio'
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