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32 lines
858 B
Plaintext
32 lines
858 B
Plaintext
easyblock = 'ConfigureMake'
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name = 'ABySS'
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version = '2.0.3'
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homepage = 'http://www.bcgsc.ca/platform/bioinfo/software/abyss'
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description = """Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"""
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toolchain = {'name': 'foss', 'version': '2018a'}
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toolchainopts = {'usempi': True}
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source_urls = ['https://github.com/bcgsc/abyss/releases/download/%(version)s/']
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sources = [SOURCELOWER_TAR_GZ]
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dependencies = [
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('Boost', '1.66.0', '-Py-2.7'),
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('sparsehash', '2.0.3'),
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('SQLite', '3.21.0', '', True),
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('pigz', '2.4', '', ('GCC', '6.3.0-2.27')),
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('zsh', '5.2'),
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]
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configopts = '--enable-maxk=256 --with-boost=$EBROOTBOOST/include '
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configopts += '--with-mpi=$EBROOTOPENMPI --with-sqlite=$EBROOTSQLITE3'
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sanity_check_paths = {
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'files': ["bin/ABYSS", "bin/ABYSS-P"],
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'dirs': []
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}
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moduleclass = 'bio'
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