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39 lines
1014 B
Plaintext
39 lines
1014 B
Plaintext
# IT4Innovations
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# LK 2021
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easyblock = 'Tarball'
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name = 'snpEff'
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version = '5.0'
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versionsuffix = '-Java-%(javaver)s-Python-%(pyver)s'
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homepage = 'https://pcingola.github.io/SnpEff/'
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description = """SnpEff is a variant annotation and effect prediction tool.
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It annotates and predicts the effects of genetic variants (such as amino acid changes)."""
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toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
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source_urls = ['https://snpeff.blob.core.windows.net/versions/']
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sources = ['%%(name)s_v%s_core.zip' % version.replace('.', '_')]
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checksums = ['2b177440eb4a2c3bbfc8f50d4adf9e405f3dcfc05a31a55c96f773f07832af34']
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dependencies = [
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('Java', '11', '', True),
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('Python', '3.8.6'),
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('Perl', '5.32.0'),
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]
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fix_perl_shebang_for = ['scripts/*.pl']
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fix_python_shebang_for = ['scripts/*.py']
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sanity_check_paths = {
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'files': ['%(name)s.jar', 'SnpSift.jar', 'scripts/%(name)s'],
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'dirs': [],
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}
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sanity_check_commands = ["%(name)s -version"]
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modextrapaths = {'PATH': 'scripts'}
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moduleclass = 'bio'
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