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54 lines
1.4 KiB
Plaintext
54 lines
1.4 KiB
Plaintext
##
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# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild
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#
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# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia
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# Homepage: https://www.adelaide.edu.au/phoenix/
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#
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# Copyright:: adelaide.edu.au/phoenix
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# Authors:: Robert Qiao <robert.qiao@adelaide.edu.au>, Exe Escobedo <exequiel.sepulvedaescobedo@adelaide.edu.au>
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# License:: MIT
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#
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# 2.10.1:
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# Adam Huffman
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# The Francis Crick Institute
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# 2.18.11:
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# Jonas Demeulemeester
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# The Francis Crick Institute
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# 2.21.1
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# Pavel Grochal (INUITS)
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# 2.25.1
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# J. Sassmannshausen (GSTT)
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# 2.25.5
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# Erica Bianco (HPCNow!)
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##
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easyblock = 'JAR'
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name = 'picard'
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version = '2.23.8'
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versionsuffix = '-Java-%(javaver)s'
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homepage = 'https://broadinstitute.github.io/picard/'
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description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format."""
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toolchain = SYSTEM
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source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s']
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sources = [{
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'filename': '%(name)s-%(version)s.jar',
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'download_filename': '%(name)s.jar',
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}]
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postinstallcmds = ["mv %(installdir)s/%(name)s-%(version)s.jar %(installdir)s/%(name)s.jar"]
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dependencies = [('Java', '11')]
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sanity_check_paths = {
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'files': ['picard.jar'],
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'dirs': [],
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}
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modloadmsg = "To execute picard run: java -jar $EBROOTPICARD/%(name)s.jar"
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moduleclass = 'bio'
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