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28 lines
832 B
Plaintext
28 lines
832 B
Plaintext
name = 'Pasha'
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version = '1.0.5'
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homepage = 'http://pasha.sourceforge.net/'
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description = "PASHA is a parallel short read assembler for large genomes using de Bruijn graphs."
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toolchain = {'name': 'ictce', 'version': '5.3.0'}
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toolchainopts = {'pic': True, 'opt': True, 'optarch': True}
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dependencies = [('tbb', '4.0.5.339', '', True)]
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source_urls = ['http://downloads.sourceforge.net/pasha']
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sources = [SOURCE_TAR_GZ]
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patches = [
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'intelmpi.patch',
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# needed since this still relies on gnu specific includes from libstdc++ which changed in latest version of libstdc++
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# since 1.0.5 pasha tries to use 'backward/' instead of 'ext/' but this might fail on some systems.
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'old-libstdc++-hash_fun-map-set_pasha-1.0.5.patch',
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]
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# Pasha's makefile is not suited for parallel execution
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parallel = 1
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moduleclass = 'bio'
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