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new file: a/apptainer/apptainer-1.2.5.eb new file: a/apptainer/apptainer-1.3.0.eb modified: a/apptainer/apptainer-1.3.1.eb modified: d/Dakota/Dakota-6.15.0-foss-2021b.eb modified: d/Dakota/Dakota-6.15.0-intel-2021b.eb new file: g/GSL/GSL-2.7-intel-compilers-2023.2.1.eb modified: h/HDF5/HDF5-1.12.1-foss-2021b-parallel.eb new file: h/htop/htop-3.3.0.eb new file: l/libxc/libxc-6.2.2-intel-compilers-2023.2.1.eb new file: n/netCDF-Fortran/netCDF-Fortran-4.6.1-iimpi-2023b.eb new file: n/netCDF/netCDF-4.9.2-iimpi-2023b.eb new file: o/Octopus/Octopus-14.1-intel-2023b-mpi.eb new file: s/squashfs-tools/squashfs-tools-4.6.1.eb new file: u/uncertainties/uncertainties-3.1.7-foss-2023b.eb
69 lines
2.5 KiB
Plaintext
69 lines
2.5 KiB
Plaintext
# IT4Innovations
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# LK 2024
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name = 'netCDF'
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version = '4.9.2'
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homepage = 'https://www.unidata.ucar.edu/software/netcdf/'
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description = """NetCDF (network Common Data Form) is a set of software libraries
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and machine-independent data formats that support the creation, access, and sharing of array-oriented
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scientific data."""
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toolchain = {'name': 'iimpi', 'version': '2023b'}
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import os
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if os.environ.get("CLUSTERNAME") in ["KAROLINA"]:
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toolchainopts = {'usempi': True, 'opt': True, 'optarch': 'march=core-avx2'}
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else:
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toolchainopts = {'usempi': True, 'opt': True}
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source_urls = ['https://github.com/Unidata/netcdf-c/archive/']
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sources = ['v%(version)s.tar.gz']
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patches = [
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'netCDF-4.9.0_skip-nasa-test.patch',
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]
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checksums = [
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{'v4.9.2.tar.gz': 'bc104d101278c68b303359b3dc4192f81592ae8640f1aee486921138f7f88cb7'},
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'19d99e03c048b037dc01f03f5b8ddc910ebaceb076d0f050540d348f26dfcd2a', # netCDF-4.9.0_skip-nasa-test.patch
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]
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builddependencies = [
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('Autotools', '20220317'),
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('CMake', '3.27.6'),
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('Doxygen', '1.9.8'),
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]
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dependencies = [
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('HDF5', '1.14.3'),
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('cURL', '8.3.0'),
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('Szip', '2.1.1'),
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('zstd', '1.5.5'),
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('bzip2', '1.0.8'),
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('libxml2', '2.11.5'),
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]
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# disable Szip, zlib parallel I/O tests, since these can hang on some systems, e.g. generoso
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# see: https://github.com/easybuilders/easybuild-easyconfigs/pull/16834
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# and https://github.com/easybuilders/easybuild-easyconfigs/pull/17107#issuecomment-1432947172
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# and https://github.com/easybuilders/easybuild-easyconfigs/pull/18523#issuecomment-1675313158
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preconfigopts = ("sed -i -e 's|@MPIEXEC@ -n 16 ./tst_parallel3|echo \"skipped by EasyBuild\"|g'"
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" -e 's|@MPIEXEC@ -n 4 ./tst_parallel5|echo \"skipped by EasyBuild\"|g'"
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" -e 's|@MPIEXEC@ -n 4 ./tst_parallel_zlib|echo \"skipped by EasyBuild\"|g'"
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" -e 's|@MPIEXEC@ -n 4 ./tst_parallel_compress|echo \"skipped by EasyBuild\"|g'"
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" %(builddir)s/%(namelower)s-c-%(version)s/nc_test4/run_par_test.sh.in &&")
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# make sure both static and shared libs are built
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# and disable "remote" tests that access a unreliable external test server over internet
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configopts = [
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"-DENABLE_DAP_REMOTE_TESTS=OFF -DBUILD_SHARED_LIBS=OFF",
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"-DENABLE_DAP_REMOTE_TESTS=OFF -DBUILD_SHARED_LIBS=ON",
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]
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buildopts = 'CFLAGS="-O3 -fPIC"'
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# some tests try to start 16 MPI ranks, so we need to allow oversubscription to avoid failing tests
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pretestopts = "OMPI_MCA_rmaps_base_oversubscribe=1 "
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runtest = 'test'
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moduleclass = 'data'
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