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2c6db9485c
modified: g/GROMACS/GROMACS-2023-foss-2022a-CUDA-12.0.0-PLUMED-2.9.0.eb new file: p/PLUMED/PLUMED-2.9.0-foss-2022a-mpi.eb modified: p/PLUMED/PLUMED-2.9.0-foss-2022a.eb
76 lines
2.2 KiB
Plaintext
76 lines
2.2 KiB
Plaintext
# IT4Innovations
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# LK 2023
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name = 'GROMACS'
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version = '2023'
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local_plum_ver = '2.9.0'
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versionsuffix = '-CUDA-12.2.0-PLUMED-2.9.0'
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homepage = 'https://www.gromacs.org'
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description = """
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GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the
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Newtonian equations of motion for systems with hundreds to millions of
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particles.
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This is a GPU enabled build, containing both MPI and threadMPI binaries.
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It also contains the gmxapi extension for the single precision MPI build.
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"""
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toolchain = {'name': 'foss', 'version': '2022a'}
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toolchainopts = {'openmp': True, 'usempi': True}
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source_urls = [
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'https://ftp.gromacs.org/pub/gromacs/',
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'ftp://ftp.gromacs.org/pub/gromacs/',
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]
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sources = [SOURCELOWER_TAR_GZ]
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patches = [
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'GROMACS-2023.1_set_omp_num_threads_env_for_ntomp_tests.patch',
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'GROMACS-2023.1_fix_tests_for_gmx_thread_mpi.patch',
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]
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checksums = [
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{'gromacs-2023.tar.gz': 'ac92c6da72fbbcca414fd8a8d979e56ecf17c4c1cdabed2da5cfb4e7277b7ba8'},
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{'GROMACS-2023.1_set_omp_num_threads_env_for_ntomp_tests.patch': '7f41bda16c9c2837624265dda4be252f655d1288ddc4486b1a2422af30d5d199'},
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{'GROMACS-2023.1_fix_tests_for_gmx_thread_mpi.patch': '6df844bb3bbc51180446a3595c61a4ef195e5f975533a04cef76841aa763aec1'},
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]
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builddependencies = [
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('CMake', '3.24.3'),
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('scikit-build', '0.15.0'),
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]
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dependencies = [
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('CUDA', '12.0.0', '', SYSTEM),
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('UCX-CUDA', '1.12.1', '-CUDA-%(cudaver)s'),
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('Python', '3.10.4'),
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('SciPy-bundle', '2022.05'),
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('networkx', '2.8.4'),
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('PLUMED', local_plum_ver),
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]
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exts_defaultclass = 'PythonPackage'
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exts_default_options = {
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'source_urls': [PYPI_SOURCE],
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'use_pip': True,
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'download_dep_fail': True,
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'sanity_pip_check': True,
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}
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exts_list = [
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('gmxapi', '0.4.2', {
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'preinstallopts': 'export CMAKE_ARGS="-Dgmxapi_ROOT=%(installdir)s ' +
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'-C %(installdir)s/share/cmake/gromacs_mpi/gromacs-hints_mpi.cmake" && ',
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'source_tmpl': 'gromacs-2023.3.tar.gz',
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'start_dir': 'python_packaging/gmxapi',
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'checksums': ['4ec8f8d0c7af76b13f8fd16db8e2c120e749de439ae9554d9f653f812d78d1cb'],
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}),
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]
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modextrapaths = {
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'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages',
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}
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moduleclass = 'bio'
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