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54 lines
1.8 KiB
Plaintext
54 lines
1.8 KiB
Plaintext
##
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# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
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#
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# Copyright:: Copyright 2012-2013 Cyprus Institute / CaSToRC, University of Luxembourg / LCSB
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# Authors:: George Tsouloupas <g.tsouloupas@cyi.ac.cy>, Fotis Georgatos <fotis.georgatos@uni.lu>,
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# Kenneth Hoste (UGent)
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# License:: MIT/GPL
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# $Id$
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#
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# This work implements a part of the HPCBIOS project and is a component of the policy:
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# http://hpcbios.readthedocs.org/en/latest/HPCBIOS_2012-94.html
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# Modified by: Adam Huffman, Jonas Demeulemeester
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# The Francis Crick Institute
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# Modified for version 4.0.5.1 by: Ruben van Dijk, University of Groningen
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##
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easyblock = 'Tarball'
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name = 'GATK'
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version = '4.1.9.0'
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versionsuffix = '-Java-%(javaver)s'
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homepage = 'https://www.broadinstitute.org/gatk/'
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description = """The Genome Analysis Toolkit or GATK is a software package developed at the Broad Institute
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to analyse next-generation resequencing data. The toolkit offers a wide variety of tools,
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with a primary focus on variant discovery and genotyping as well as strong emphasis on
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data quality assurance. Its robust architecture, powerful processing engine and
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high-performance computing features make it capable of taking on projects of any size."""
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toolchain = {'name': 'GCCcore', 'version': '10.2.0'}
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source_urls = ['https://github.com/broadinstitute/gatk/releases/download/%(version)s/']
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sources = ['gatk-%(version)s.zip']
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dependencies = [
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('Java', '11', '', True),
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('Python', '3.8.6'),
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]
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modextrapaths = {'PATH': ''}
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sanity_check_paths = {
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'files': ['gatk'],
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'dirs': [],
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}
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sanity_check_commands = [
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"gatk --help",
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"gatk --list",
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]
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# modloadmsg = "WARNING: GATK v%(version)s support for Java 11 is in beta state. Use at your own risk.\n"
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moduleclass = 'bio'
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