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27 lines
957 B
Plaintext
27 lines
957 B
Plaintext
easyblock = 'Tarball'
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name = 'GATK'
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version = '1.0.5083'
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homepage = 'http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit'
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description = """The GATK is a structured software library that makes writing efficient analysis tools
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using next-generation sequencing data very easy, and second it's a suite of tools for working with human
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medical resequencing projects such as 1000 Genomes and The Cancer Genome Atlas. These tools include things
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like a depth of coverage analyzers, a quality score recalibrator, a SNP/indel caller and a local realigner."""
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toolchain = SYSTEM
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# download manually from http://www.broadinstitute.org/gatk/download
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sources = ['GenomeAnalysisTK-%(version)s.tar.bz2']
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dependencies = [('Java', '1.7.0_10')]
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modloadmsg = """To execute GATK run: java -jar \\$EBROOTGATK/GenomeAnalysisTK.jar"""
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sanity_check_paths = {
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'files': ["GenomeAnalysisTK.jar"],
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'dirs': ["resources"],
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}
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moduleclass = 'bio'
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