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56 lines
1.6 KiB
Plaintext
56 lines
1.6 KiB
Plaintext
# Contribution from the Crick HPC team
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# uploaded by J. Sassmannshausen
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#
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# Updated to version 0.6.2: Pavel Grochal (INUITS)
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# Updated to version 0.6.5: Alex Domingo (VUB)
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#
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# IT4Innovations JK 2021
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# easyconfig taken from
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# https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/t/Trim_Galore/Trim_Galore-0.6.6-GCC-10.2.0-Python-2.7.18.eb
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#
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easyblock = 'Tarball'
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name = 'Trim_Galore'
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version = '0.6.6'
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versionsuffix = '-Python-%(pyver)s'
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homepage = 'https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/'
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description = """Trim Galore is a wrapper around Cutadapt and FastQC to
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consistently apply adapter and quality trimming to FastQ files, with extra
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functionality for RRBS data."""
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toolchain = {'name': 'GCC', 'version': '10.2.0'}
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source_urls = ['https://github.com/FelixKrueger/TrimGalore/archive/']
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sources = ['%(version)s.tar.gz']
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checksums = ['b8db8ffd131d9d9e7c8532a5a1f1caee656c0c58d3eafd460fee3c39b9fcab5e']
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builddependencies = [('binutils', '2.35')]
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dependencies = [
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('Python', '2.7.18'),
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('Java', '11', '', True),
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('pigz', '2.6'),
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('Perl', '5.32.0'),
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('FastQC', '0.11.9', '-Java-%(javaver)s', True),
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('cutadapt', '1.18', versionsuffix),
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]
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postinstallcmds = [
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"chmod +x %(installdir)s/%(namelower)s",
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"sed -i '1 i#!/usr/bin/env perl' %(installdir)s/%(namelower)s",
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"mkdir %(installdir)s/bin && mv %(installdir)s/%(namelower)s %(installdir)s/bin/%(namelower)s",
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]
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sanity_check_paths = {
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'files': ["bin/trim_galore"],
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'dirs': [],
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}
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sanity_check_commands = [
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"trim_galore --help"
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]
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moduleclass = 'bio'
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