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39 lines
877 B
Plaintext
39 lines
877 B
Plaintext
easyblock = 'ConfigureMake'
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name = 'RSEM'
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version = '1.3.0'
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homepage = 'http://deweylab.github.io/RSEM/'
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description = """RNA-Seq by Expectation-Maximization"""
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toolchain = {'name': 'foss', 'version': '2016b'}
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source_urls = ['https://github.com/deweylab/RSEM/archive/']
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sources = ['v%(version)s.tar.gz']
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patches = ['RSEM-%(version)s_makefiles.patch']
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skipsteps = ['configure']
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installopts = "prefix=%(installdir)s"
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dependencies = [
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('ncurses', '6.0'),
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('zlib', '1.2.8'),
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('Perl', '5.24.0'),
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('R', '3.3.1'),
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]
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sanity_check_paths = {
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'files': [
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'bin/rsem-calculate-expression',
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'bin/rsem-plot-model',
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'bin/rsem-plot-transcript-wiggles',
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'bin/rsem-bam2wig',
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'bin/rsem-generate-data-matrix',
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'bin/rsem-run-em',
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'bin/convert-sam-for-rsem'],
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'dirs': ['bin/samtools-1.3'],
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}
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moduleclass = 'bio'
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