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new file: b/Boost/Boost-1.68.0-intel-2017a.eb new file: b/Boost/Boost-1.68.0-intel-2017c.eb new file: "b/bcl2fastq2/\\" new file: b/bcl2fastq2/bcl2fastq2-2.20.0-intel-2017a-Py-2.7.eb new file: b/bcl2fastq2/bcl2fastq2-2.20.0-intel-2017a-Py-3.6.eb modified: d/DIRAC/DIRAC-18.0-intel-2017c-Py-2.7-test.eb new file: f/FastQC/FastQC-0.11.3.eb new file: f/FastQC/FastQC-0.11.8.eb new file: f/fontconfig/fontconfig-2.13.0-libpng-1.6.34.eb new file: g/GATK/GATK-4.1.2.0-Java-1.8.0_202.eb new file: g/GDAL/GDAL-2.4.0-intel-2017a-Py-3.6.eb new file: g/GEOS/GEOS-3.7.2-Py-3.6.eb new file: g/gnuplot/gnuplot-5.2.7-GCC-6.3.0-2.27.eb modified: h/HTSlib/HTSlib-1.6-intel-2017a.eb new file: l/libMesh/libMesh-1.4.1-intel-2017a.eb new file: l/libMesh/libMesh-1.4.1-intel-2017c.eb new file: m/MUMPS/MUMPS-5.2.0-intel-2017c-parmetis.eb modified: p/Python/Python-3.6.8-GCC-6.3.0-2.27-base.eb new file: r/R/R-3.5.3-intel-2017a-Py-3.6.eb modified: s/SAMtools/SAMtools-1.6-intel-2017a.eb new file: s/SWIG/SWIG-3.0.12-Py-3.6.eb deleted: b/bcl2fastq2/bcl2fastq2-2.20.0-intel-2017a-Python-2.7.13.eb
40 lines
1010 B
Plaintext
40 lines
1010 B
Plaintext
# IT4Innovations 2019
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easyblock = 'ConfigureMake'
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name = 'bcl2fastq2'
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version = '2.20.0'
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versionsuffix = '-Py-2.7'
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homepage = 'https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html'
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description = """bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by
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Illumina sequencing systems to standard FASTQ file formats for downstream analysis."""
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toolchain = {'name': 'intel', 'version': '2017a'}
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source_urls = [
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'ftp://webdata2:webdata2@ussd-ftp.illumina.com/downloads/software/bcl2fastq/']
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sources = [{
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'filename': '%(name)s-v2-20-0-tar.zip',
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# source file is a .zip that contains a .tar.gz
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'extract_cmd': 'unzip -p %s | tar -xzvf -',
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}]
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start_dir = 'src'
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configopts = '--force-builddir --with-cmake=cmake '
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builddependencies = [
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('CMake', '3.8.1', '', True),
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]
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dependencies = [
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('Py', '2.7', '', True),
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]
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sanity_check_paths = {
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'files': ['bin/bcl2fastq'],
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'dirs': ['lib']
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}
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moduleclass = 'bio'
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