# IT4Innovations 2019

easyblock = 'PackedBinary'

name = 'FastQC'
version = '0.11.8'

homepage = 'http://www.bioinformatics.babraham.ac.uk/projects/fastqc/'
description = """FastQC is a quality control application for high throughput sequence data.
 It reads in sequence data in a variety of formats and can either provide an interactive
 application to review the results of several different QC checks, or create an HTML based
 report which can be integrated into a pipeline."""

toolchain = SYSTEM

source_urls = ['http://www.bioinformatics.babraham.ac.uk/projects/%(namelower)s/']
sources = ['%(namelower)s_v%(version)s.zip']

dependencies = [('Java', '1.8.0_202')]

install_cmd = "cp -a FastQC/* %(installdir)s && chmod +x %(installdir)s/fastqc"

sanity_check_paths = {
    'files': ["fastqc", "fastqc_icon.ico", "INSTALL.txt", "jbzip2-0.9.jar", "LICENSE.txt",
                "README.txt", "RELEASE_NOTES.txt", "run_fastqc.bat", "sam-1.103.jar"],
    'dirs': ["Configuration", "Help", "Templates", "uk"],
}
# How to create working alias?

moduleclass = 'bio'