# This file is an EasyBuild reciPY as per https://github.com/hpcugent/easybuild
# Author: Pablo Escobar Lopez
# sciCORE - University of Basel
# SIB Swiss Institute of Bioinformatics
# Author: Adam Huffman
# The Francis Crick Institute

easyblock = 'MakeCp'

name = 'STAR'
version = '2.5.1b' 

homepage = 'https://github.com/alexdobin/STAR'
description = """ STAR aligns RNA-seq reads to a reference genome using 
 uncompressed suffix arrays. """

toolchain = {'name': 'foss', 'version': '2015b'}
toolchainopts = {'openmp': True}

source_urls = ['https://github.com/alexdobin/STAR/archive/']
sources = ['%(version)s.tar.gz']

dependencies = [
    ('zlib', '1.2.8'),  
]

start_dir = 'source'

buildopts = ' STAR && make STARlong'

parallel = 1

files_to_copy = [(["source/STAR", "source/STARlong"], "bin"), "CHANGES.md", "doc", "extras", "LICENSE", "README.md", "RELEASEnotes.md"]
        
sanity_check_paths = {
    'files': ["bin/STAR", "bin/STARlong"],
    'dirs': [],
}

moduleclass = 'bio'